AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pdy4g00881 | ATGAAAGACGGCAGTAGCAGTGGTGGCGCCGGAAGAAAACAAGGGGCGGCGTCACCGTGTGCTGCCTGCAAGCTTTTGCGACGGAGATGCTCCCAGGATTGTGTTTTTGCTCCTTACTTCCCCGCTGACGAGCCTCACAAATTCGCCAGTGTTCATAAGGTCTTTGGTGCTAGCAATGTCAACAAGATGCTCCAGGAATTACCCGAGCATCATAGAGGCGATGCAGTGAGTTCAATGGTGTACGAGGCGAATGCGAGGATCCGAGATCCGGTGTACGGTTGTGTAGGTGCAATATCATCCCTACAACAACAAATAGATGTACTTCAAGCACAACTTGCGGTATCACAAGCCGAAGTGGTTCACATGAGAATGCGCCAGTATTCATCGAGTCCTATCAACGACTCTCGTGAAAACATCTCGCCATCTTCTCGACATCATCCGTCGCAGACACCAACCAGGTCCCTTTTTGGCATGGACATGGTGGTGGACCAAACAAATATGGGCATGGGGGAGTCCTTATGGTCTTCATGCAATTAG | 537 | 50.47 | MKDGSSSGGAGRKQGAASPCAACKLLRRRCSQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHHRGDAVSSMVYEANARIRDPVYGCVGAISSLQQQIDVLQAQLAVSQAEVVHMRMRQYSSSPINDSRENISPSSRHHPSQTPTRSLFGMDMVVDQTNMGMGESLWSSCN | 178 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pdy4g00881 | 178 | Coils | Coil | 98 | 118 | - | - | |
| Pdy4g00881 | 178 | MobiDBLite | consensus disorder prediction | 127 | 155 | - | - | |
| Pdy4g00881 | 178 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 17 | 143 | - | - | |
| Pdy4g00881 | 178 | ProSiteProfiles | LOB domain profile. | 18 | 119 | IPR004883 | - | |
| Pdy4g00881 | 178 | Pfam | Lateral organ boundaries (LOB) domain | 19 | 116 | IPR004883 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pdy4g00881 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Pdy | Pdy-Chr1:79153327 | Pdy4g00881 | Pdy-Chr4:16548874 | dispersed | |
| Pdy | Pdy-Chr4:16548874 | Pdy5g02616 | Pdy-Chr5:76277177 | dispersed | |
| Pdy | Pdy-Chr4:16548874 | Pdy1g04547 | Pdy-Chr1:103178971 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Pdy1g00222 | . | 10 | 247 | AS2 family | AT3G03760 | 54.812 | 3.62e-72 | 219.0 | |
| Pdy1g02711 | . | 7 | 245 | AS2 family | AT2G42430 | 52.5 | 1.41e-70 | 213.0 | |
| Pdy1g02714 | ACH | 1 | 130 | AS2 family | AT2G42440 | 72.263 | 2.79e-68 | 208.0 | |
| Pdy1g03988 | . | 1 | 118 | AS2 family | AT3G26620 | 60.976 | 1.44e-53 | 163.0 | |
| Pdy2g00715 | . | 24 | 120 | AS2 family | AT1G06280 | 62.887 | 1.28e-41 | 139.0 | |
| Pdy2g01220 | . | 1 | 145 | AS2 family | AT5G67420 | 65.986 | 9.15e-66 | 201.0 | |
| Pdy2g03646 | . | 1 | 160 | AS2 family | AT3G03760 | 60.123 | 8.43e-61 | 191.0 | |
| Pdy3g00719 | . | 1 | 125 | AS2 family | AT5G63090 | 87.2 | 3.13e-74 | 220.0 | |
| Pdy3g00791 | ACH | 27 | 140 | AS2 family | AT3G47870 | 53.043 | 8.17e-37 | 129.0 | |
| Pdy3g02765 | . | 1 | 248 | AS2 family | AT5G66870 | 55.682 | 1.62e-84 | 255.0 | |
| Pdy3g02766 | . | 1 | 248 | AS2 family | AT5G66870 | 55.682 | 1.62e-84 | 255.0 | |
| Pdy3g03020 | . | 33 | 144 | AS2 family | AT3G27650 | 81.25 | 1.94e-67 | 200.0 | |
| Pdy4g00881 | . | 4 | 171 | AS2 family | AT1G31320 | 68.235 | 2.60e-70 | 209.0 | |
| Pdy4g02879 | . | 1 | 249 | AS2 family | AT5G67420 | 53.36 | 8.55e-77 | 229.0 | |
| Pdy4g03827 | . | 18 | 204 | AS2 family | AT4G00220 | 63.776 | 1.05e-72 | 219.0 | |
| Pdy5g00436 | . | 2 | 135 | AS2 family | AT5G63090 | 71.852 | 1.09e-64 | 196.0 | |
| Pdy5g00608 | ACH | 1 | 150 | AS2 family | AT5G67420 | 54.967 | 8.14e-49 | 157.0 | |
| Pdy5g01104 | . | 51 | 119 | AS2 family | AT3G03760 | 85.507 | 1.12e-37 | 125.0 | |
| Pdy5g01263 | ACH | 27 | 328 | AS2 family | AT3G47870 | 37.785 | 7.15e-55 | 179.0 | |
| Pdy5g02347 | . | 7 | 245 | AS2 family | AT2G42430 | 55.691 | 1.97e-78 | 234.0 | |
| Pdy5g02348 | ACH | 1 | 162 | AS2 family | AT2G42440 | 63.804 | 1.50e-65 | 201.0 | |
| Pdy5g02616 | . | 3 | 193 | AS2 family | AT2G30130 | 62.621 | 3.07e-79 | 233.0 | |
| Pdy6g00169 | . | 3 | 199 | AS2 family | AT1G65620 | 64.474 | 2.06e-74 | 222.0 | |
| Pdy6g00818 | . | 27 | 132 | AS2 family | AT3G47870 | 57.009 | 3.84e-37 | 130.0 | |
| Pdy6g00973 | . | 1 | 167 | AS2 family | AT5G06080 | 48.901 | 3.05e-50 | 158.0 | |
| Pdy6g02185 | . | 1 | 118 | AS2 family | AT3G26620 | 63.415 | 1.74e-53 | 163.0 | |
| Pdy6g02855 | ACH | 1 | 129 | AS2 family | AT4G37540 | 61.24 | 1.44e-52 | 166.0 | |
| Pdy7g01464 | . | 1 | 144 | AS2 family | AT3G49940 | 68.027 | 6.92e-66 | 201.0 | |
| Pdy7g01870 | . | 28 | 132 | AS2 family | AT3G47870 | 54.206 | 3.03e-36 | 125.0 | |
| Pdy7g01872 | . | 27 | 132 | AS2 family | AT3G47870 | 53.704 | 2.20e-35 | 123.0 | |
| Pdy7g02017 | . | 35 | 158 | AS2 family | AT3G13850 | 68.548 | 1.38e-53 | 175.0 | |
| Pdy8g02079 | . | 1 | 239 | AS2 family | AT4G37540 | 53.498 | 9.14e-77 | 229.0 | |
| Pdy8g02149 | . | 3 | 258 | AS2 family | AT5G66870 | 49.231 | 6.44e-71 | 219.0 | |
| Pdy8g02148 | . | 3 | 258 | AS2 family | AT5G66870 | 49.231 | 7.40e-71 | 218.0 | |
| Pdy8g03196 | . | 3 | 117 | AS2 family | AT2G30130 | 88.889 | 1.89e-73 | 218.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Pdy | LOB | 2e-43 | No_clan | TF | LOB |