AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00883 ATGAATACGCCACCACCAAATATGAACATGGACACCGCAAAAGAAGAATTCTTGAAGGAATTTAGTGAATCTTACGGTTACCCCAACGCCCCCAAGAACATTGATGATATTCGAGCTACCGAGTTTAAAAGACTTGATGGGAATGTGTATTTGGATCATGCTGGTGCCACTTTATATTCTGAATTACAGATGGAAGCAATTTTTAAAGATCTTACAACCACTGTTTATGGCAATCCCCATAGTCAAAGCAGCTCTAGCTTGGTGACCTCAGACATTGTAGAAGATGCTCGTCATCGGGTTCTCAAACTGTGTAATGCGTCTCCGAAAGAGTATAAATGTATCTTCACTTCTGGGGCAACAGCAGCTCTTAAACTTGTTGGCGAGGCTTTTCCTTGGAGCAGTCAGAGCACTTTCATGTATACAATCGAGAATCACAACAGTGTCCTTGGGATTCGAGAATATGCTCTCAATAAAGGAGCTGCAGCATTAGCAATAGACTTTGGAGAAGCAGTAGAATCTTCCATCAAGGTTTTACACCATCCTCTACAAAAGAGAAGTGAAGCTCGGGTTCTGGACAAAGAGCCAACTGGCCAAATGTACAATCTATTTGCCTTCCCTTCAGAGTGTAATTTCTCAGGGGTGAGGTTCAACCTTGATTTGATAGACAGAATTAAAGAAGATCCAGAGAAGTTATTCGAAGGCCATGAACATTGCAGGGGAAACTGGATGATTTTGCTTGATGCTGCAAAAGGGTGTTCCACAGACCCTCCAAATTTGTCAAAACATAAGGCGGACTTTGTTGTCATCTCATTTTACAAACTTTTTGGCTATCCAACTGGACTTGGAGCATTGATAGTTCAAAATGAAGCTGCAAAGCTACTAAAGAAGACCTACTTTAGTGGAGGCACAGTGGCGGCATCAATTGCAGACATCGACTTTGTGAAAAGAAGAGAAGGTATTGAGGAGTCATTTGAAGACGGAACTCTGTCATTCTTGAATATAGCATCCATTCGCCATGGATTTGACATCCTCAATGCTTTGACCCCTTTATCCATATCAAGGCATACGTCTTCTCTAGCAAACTATACAAGAAATACCCTTTTGGCATTAAGGCATGCAGATGGGCAGGAGGTTTGCAAAATATACGGCCTGGATCATTCAAAGGCTGCATATAGTGGACTTGGTCCTGTAGTTTCTTTCAACTTGAAACGGCCTGATGGTTCTTGGGTCGGCCATCGTGAAGTGGAAAAGTTGGCTTCTTTGTCTGGAATTCAGCTACGGACAGGGTGCTTTTGCAATCCTGGTGCATGTTCCAAATATCTTGGTTTGTCTCATTCAGATCTTATGTCCAACATTGAGGCTGGGCATGTTTGCTGGGATGACTATGATATATTACACGGGAAACCAACTGGGTCTGTTAGAGTATCTTTTGGTTACATGTCAACATTTGAAGATGCTTGGAGATTCATGAACTTCATTGTTAGCTCCTTTGTCTTGTCTCCTACCAATACATTGAGATCCAGACCTATCCAATCTGCCACAGGTCACAAAACAGCAACAGAACATTATCTTACATCAATTGTTGTGTATCCAATAAAGTCATGTGCAGGATTCAAAGTGGACAGTTGGCCTCTAAGCAGTACTGGATTGTTATATGATCGAGAATGGCTTCTCAAAAGCATGAACGGCGAAGTTCTTACACAGAAGAAGGTACCTGAAATGTACTTTATTGGTACAAAGATTGACCTCAAAACAGGAATACTTTATGTAGAATCTCCTCGGTGCAAAGAACAGCTACTTATAGAACTTCATTCAGATACCTTTTCTGTGGGAGAAGAAATCAATGTACATGCCCAAAGATATGAAGTCCTGGGCTATGATAACAAGATCGACACTTGGTTTAGTAATGCAGTTGGTCAGTCTTGTTGTTTATTAAGATCTAGTTCCAGAAGCTGTATCCGTTTGGAAAGAAGCAGAAACACGGGCATATGCAGAGATATAAATACCAGATTAAACTTTGTTAATGAAGCTCAGCTTTTACTGATATCTGAGGAAAGTGTATCTGACCTCAACCATAGATTAAAATCAAATAAAGAAGGGTCTGTTGGATTACCAATGAAAGTTGATGTAATGAGATTTCGGCCCAATCTTGTCATATCTGGTGGTGACCCATATGTTGAAGACAGTTGGAGTGGTCTTAAGATTGGGAACAATCACTTCATGTCATTAGGTGGTTGCAATCGTTGCCAGATGATCAATTTGAATTTTCAAGCTGATAAGGTACAGAGATCAAATGAGCCTCTAGCTACTTTAGCAGCATACAGGAGGTCAAAGGGCAAGATCCTCTTTGGAATTTTACTGAGATATGAAAGTGACAACAAGGCCGGAGAAGAAATATCCTCATGGCTTCAAACGGGACAACAAGTATACGCTGATGGAGGGTGA 2445 41.1 MNTPPPNMNMDTAKEEFLKEFSESYGYPNAPKNIDDIRATEFKRLDGNVYLDHAGATLYSELQMEAIFKDLTTTVYGNPHSQSSSSLVTSDIVEDARHRVLKLCNASPKEYKCIFTSGATAALKLVGEAFPWSSQSTFMYTIENHNSVLGIREYALNKGAAALAIDFGEAVESSIKVLHHPLQKRSEARVLDKEPTGQMYNLFAFPSECNFSGVRFNLDLIDRIKEDPEKLFEGHEHCRGNWMILLDAAKGCSTDPPNLSKHKADFVVISFYKLFGYPTGLGALIVQNEAAKLLKKTYFSGGTVAASIADIDFVKRREGIEESFEDGTLSFLNIASIRHGFDILNALTPLSISRHTSSLANYTRNTLLALRHADGQEVCKIYGLDHSKAAYSGLGPVVSFNLKRPDGSWVGHREVEKLASLSGIQLRTGCFCNPGACSKYLGLSHSDLMSNIEAGHVCWDDYDILHGKPTGSVRVSFGYMSTFEDAWRFMNFIVSSFVLSPTNTLRSRPIQSATGHKTATEHYLTSIVVYPIKSCAGFKVDSWPLSSTGLLYDREWLLKSMNGEVLTQKKVPEMYFIGTKIDLKTGILYVESPRCKEQLLIELHSDTFSVGEEINVHAQRYEVLGYDNKIDTWFSNAVGQSCCLLRSSSRSCIRLERSRNTGICRDINTRLNFVNEAQLLLISEESVSDLNHRLKSNKEGSVGLPMKVDVMRFRPNLVISGGDPYVEDSWSGLKIGNNHFMSLGGCNRCQMINLNFQADKVQRSNEPLATLAAYRRSKGKILFGILLRYESDNKAGEEISSWLQTGQQVYADGG 814
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00883 814 Gene3D - 64 346 IPR015421 -
Pdy4g00883 814 Pfam MOSC N-terminal beta barrel domain 523 640 IPR005303 -
Pdy4g00883 814 Pfam Aminotransferase class-V 49 162 IPR000192 -
Pdy4g00883 814 Pfam Aminotransferase class-V 241 486 IPR000192 -
Pdy4g00883 814 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 12 498 - -
Pdy4g00883 814 Pfam MOSC domain 669 809 IPR005302 GO:0003824(InterPro)|GO:0030151(InterPro)|GO:0030170(InterPro)
Pdy4g00883 814 ProSiteProfiles MOSC domain profile. 650 812 IPR005302 GO:0003824(InterPro)|GO:0030151(InterPro)|GO:0030170(InterPro)
Pdy4g00883 814 Hamap Molybdenum cofactor sulfurase [MOCOS]. 24 811 IPR028886 GO:0006777(InterPro)|GO:0008265(InterPro)
Pdy4g00883 814 SUPERFAMILY PLP-dependent transferases 39 494 IPR015424 -
Pdy4g00883 814 SUPERFAMILY MOSC N-terminal domain-like 524 654 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00883 K15631 molybdenum cofactor sulfurtransferase [EC:2.8.1.9]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:16629371 Pdy5g01567 Pdy-Chr5:47916687 dispersed
Pdy Pdy-Chr4:16629371 Pdy6g02334 Pdy-Chr6:62394450 transposed
Pdy Pdy-Chr4:16629371 Pdy8g02153 Pdy-Chr8:56475559 transposed