AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00956 ATGGCTTCATCTGGAAATCAAAATCAACAACAACAACCAGTTGGAAGACCATTTGATGTTCAAAGATTATTCAACCCTAATTCGTCACCACAACCACCAATCACAACTCTCCAAAACCCCAACAATCCATACCCTCCACCGTCTTCCGCCGCTTCTTACCCTCCACCCACCGTCACCGGCGGACCTTACTCTTACCAGACACCTCAAACTTTCCACAATCAATTCCATATCCCACCACCCCCTTTCCACCATCAACAACAACCAGACGAACATTTGGCTTCTAATTTGCAACACCAGCGATCGCTTCCTTATCCGACATCCCCTCTTCAACCGCCTAGCCCTAACAATACGAACCCTAACCATGGTGCTCGACTCATGGCCCTTTTAAGCGCGCCACCGCCTTCTACTCCCGATATTCCTTCTCAATCTTCCATGCCTTTACCGCCACTTCCTACACAGAACCCTACTTTTAACCCTTCATCGGCTGGTCCGTCGCGGATGTCAAGCAGTAAGTTACCTAAGGGACGGCATTTGATCGGTGATCGTGTTGTTTATGACATAGATGTTAGATTGCCTGGAGAGATTCAGCCTCAACTTGAGGTCACTCCGATTACCAAGTATGGTTCGGATCCTAATTTGGTATTGGGTCGTCAGATTGCCGTTAACAAGAATTATATATGTTATGGTTTGAAACTGGGAACTATCAGGGTTCTTAACATAAATACTGCTCTAAGATCACTGCTTAAAGGTCTTGCTCAGAGGGTTACGGACATGGCTTTCTTTGCAGAGGATGTTCACCTTCTAGCCAGTGCAAGCATGGATGGACGAGTTTATGTTTGGAAGATTGTAGAATGTCCTGATGAGTATGATAAGCCACAGATCACAGGAAAAATAGTTATTGCCGTCCAAATTGTAGGAGAAGGAGAACCTGTTCATTCTCGAGTTTGTTGGCACTGCCATAAACAAGAAGTTCTTGTAGTTGGAATTGGGAATCGTATTCTTAGACTTGATACTATAAAGATTGGGAGAGGTAAAGTATATTCTGCAGAGGAACCTCTTGAATGCCCTGTCGGTAAGTTAATTGATGGAGTTCAGTTTGTTGGTAAGCATGATGGTGAAGTGACCGATCTTTCAATGTGCCAGTGGATGACCACTCGTTTGGTTTCTGCTTCTGTTGATGGAACGATAAAGATCTGGGAAGATCGCAAATCGTCACCGATTGCAGTACTAAGACCACACGATGGCCTTCCTGTCAATTCTGTTACATTCTTGACTGCTTCTCATCGCCCAGATCACATCATTCTCGTCACTGGGGGTCCGTTGAATCGTGAAGTGAAAATATGGGCCTCTGAAAGTGAAGAAGGGTGGTTGCTTCCTAGCGATGCGGATTCATGGCAATGTGTTCAGACATTAGAATTAAAAAGTTCTGCTCAACCCACATTCGAAGATGCATTCTTCAATCAACTAGTTCCATTACCTCAAGCAGGTCTTCTTTTACTAGCAAATGCCAAGAAAAATGCCATTTATGCTCTACACTTGGATTATGGTCCCAATCCAGAAACAACCCGTATGGATTACATTGCAGAGTTTACTGTTACTATGCCGATTTTAAGCTTTACTGGCACAAGCGATCTATTACCAAATGGGGAGCACATTGTTCAGGTCTATTGTGTCCAAACACAAGCTATCCAACAATATGCTCTAGACTTGTCCCAGTGCCTACCACCTCCTGTTTATGATGTCGTGTATGAGAGATCAGGTTCAACGCTTTCACTCGAGGCAACAGGTCCCGAAGGTTTTACCGGTTTGGAACCGTCTATGAGTTCTCCTGAAACTATATCCATCCCATCTCCTGTTGTCTCACCAAAGGTTCCATCAAGCCCTAAGTTAATGGGAAAAGTTTCTGACATTAGAAGCCCGTCTAGTGGTTTTGAGCCTCATCATCAACTCAACGGTTATGATGATCGGAAAATTATAATTATGGAATATCCCGTTGATAGGCAATTGGAAACTGCTCATTCTAATGTGTCTAATGCACCCTCGTTAGATGATGATGAAAGCAAAGTTGCAAAAGAGAAATTTAGGCATCCAACTCATCTTGTTACCCCTGCTGAATTGATGGCCACGTCATCTGCTGAAGTAACTGATGTGGCGGTGAAGTCGGATACACAGAATGCTGAGCTGGAGGAGGTTAAGGTTGTGGGTGAAGCAGGAATTGGTCAAGATGTCAATACTTCCTTGCAAGCTGAACTTAATGGTTCGTCTCAAGAACCGAAGGAAAAATCTAAAATTTTCTCCTCACAGGCATCAGGTCTTGGGCTTGATATGGTTAACGAGTCTAAAAAACTTGATGGTATTGTAGAAAGCAAGGAACTGGATCAAAGTTCAGATGTTTTGGATGAAGTTCAAGAAACGGAAACTGATCTTCCGGGACCCATCGAGACAGGAATTGTTCAATCTGGGGATCGCTTACTGAAATCAAAAAAACAAAGGAGAAAAAATGCTCAAACATCAGGTCAATCTTCTTCTCTGAGTGTCTTAAAGTCAACTGATTCTTGTGATGGCGTGACTTCAAGTATCCCCTCAGCTGAAGCCATACTTTTGAAAATTCAGTCCATGCAAGAAGCACTTGCCGAGGTTTTGATCAATCAAAAGGAAATTCAAAAGCAGTTTCCAGTGGTGGCCGCAGGACCAATAACAAAGGAAGGGAAAAGAATTGAGGCAGCCATTGGCAAGAGTATGGAGAAATTACATAAAGCTAATTCTGATGCTAACTGGGCTCGTATTCAAGAAGAGTTCACAAAACAGGAAAAGTCAAACAAAGACCGCTATCAGCAAGTTTCAACTTCGGCTTCAAATGGCCTCAAGGAATTACTTGTAGCATCAGAGAAAATACTCAAGAAGGAAGTGGCTGCAGTTGCTCCTGCTGTTGGTCGCTTGGTTACTCCAATCATTGACAAGGCAGTCTCCACAGCTATCTCAGAGGCTTTCCAGAGGGGCATAGGTGATAAGGCTGTAAATCAACTGGAGAAAGCAGTTAATTCAAAACTTGAAGCTACTGTCTCTAGGCAAATTCAAGCTCAATTTCAAACATCTGGGAAACAAGGTTTACAGGAAGCGATGAGGTCTAGTATGGAGGCTTTGGTTGTTCCTTCTTTTGAGAGGTCCTGCAAGACCATGTTTGATCAGGTTGATGCCAGTTTTCAGAAGGGGATGCTTGAACACACAACTGCAACTCAGCAGCAAGTTGAGTCCAAACATTCACCTTTGGTCTTCGCTTTGAGGGATACCATCAATGCAGCTGCATCTATGACTCAAACATTGACCAGCGAACTGGCTGATGGCCAGAGGAAATTGATGACACTTGCAACTTCTAAATCCACAAATCCATTGCTTACACAAATAAGTAATGGGGCTTCTGGTAGTTTCCATGAAAAGATTGAAGCCCCTGTGGATCCAACAAAAGAGCTATCTAGGTTGGTTTATGAGCACAAATATGAGGAGGCTTTCACTGCTGCTTTGCAAAGAAGTGATGTTCGGATTGTTTCGTGGCTATGCTCTCAGGTTGATCTACAGGGGATACTAACAAGTAACCCTGTTCCTCTGAGCCAAGGGGTACTACTATCATTGCTGCAACAGTTGGCATGTGATATTGGGAACGAATCATCCAGGAAACTTGGTTGGATGATGGATGTGGTGGTAGCCATCAAACCATCAGACGGGATCATTGCAATGCATGTAAGGCCAATATTTGAACAAGTGCACTCGATATTGAACCATCAGGTGAGTCTCCCCACGACTTCTGTTGCAGAGTTGTCCAGCCTACGTGTGGTCATGAAACTTATAAACTCAACACTATAA 3861 43.64 MASSGNQNQQQQPVGRPFDVQRLFNPNSSPQPPITTLQNPNNPYPPPSSAASYPPPTVTGGPYSYQTPQTFHNQFHIPPPPFHHQQQPDEHLASNLQHQRSLPYPTSPLQPPSPNNTNPNHGARLMALLSAPPPSTPDIPSQSSMPLPPLPTQNPTFNPSSAGPSRMSSSKLPKGRHLIGDRVVYDIDVRLPGEIQPQLEVTPITKYGSDPNLVLGRQIAVNKNYICYGLKLGTIRVLNINTALRSLLKGLAQRVTDMAFFAEDVHLLASASMDGRVYVWKIVECPDEYDKPQITGKIVIAVQIVGEGEPVHSRVCWHCHKQEVLVVGIGNRILRLDTIKIGRGKVYSAEEPLECPVGKLIDGVQFVGKHDGEVTDLSMCQWMTTRLVSASVDGTIKIWEDRKSSPIAVLRPHDGLPVNSVTFLTASHRPDHIILVTGGPLNREVKIWASESEEGWLLPSDADSWQCVQTLELKSSAQPTFEDAFFNQLVPLPQAGLLLLANAKKNAIYALHLDYGPNPETTRMDYIAEFTVTMPILSFTGTSDLLPNGEHIVQVYCVQTQAIQQYALDLSQCLPPPVYDVVYERSGSTLSLEATGPEGFTGLEPSMSSPETISIPSPVVSPKVPSSPKLMGKVSDIRSPSSGFEPHHQLNGYDDRKIIIMEYPVDRQLETAHSNVSNAPSLDDDESKVAKEKFRHPTHLVTPAELMATSSAEVTDVAVKSDTQNAELEEVKVVGEAGIGQDVNTSLQAELNGSSQEPKEKSKIFSSQASGLGLDMVNESKKLDGIVESKELDQSSDVLDEVQETETDLPGPIETGIVQSGDRLLKSKKQRRKNAQTSGQSSSLSVLKSTDSCDGVTSSIPSAEAILLKIQSMQEALAEVLINQKEIQKQFPVVAAGPITKEGKRIEAAIGKSMEKLHKANSDANWARIQEEFTKQEKSNKDRYQQVSTSASNGLKELLVASEKILKKEVAAVAPAVGRLVTPIIDKAVSTAISEAFQRGIGDKAVNQLEKAVNSKLEATVSRQIQAQFQTSGKQGLQEAMRSSMEALVVPSFERSCKTMFDQVDASFQKGMLEHTTATQQQVESKHSPLVFALRDTINAAASMTQTLTSELADGQRKLMTLATSKSTNPLLTQISNGASGSFHEKIEAPVDPTKELSRLVYEHKYEEAFTAALQRSDVRIVSWLCSQVDLQGILTSNPVPLSQGVLLSLLQQLACDIGNESSRKLGWMMDVVVAIKPSDGIIAMHVRPIFEQVHSILNHQVSLPTTSVAELSSLRVVMKLINSTL 1286
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00956 1286 MobiDBLite consensus disorder prediction 133 155 - -
Pdy4g00956 1286 MobiDBLite consensus disorder prediction 828 852 - -
Pdy4g00956 1286 Gene3D - 1202 1286 IPR044938 -
Pdy4g00956 1286 MobiDBLite consensus disorder prediction 792 816 - -
Pdy4g00956 1286 MobiDBLite consensus disorder prediction 834 852 - -
Pdy4g00956 1286 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 282 IPR001680 GO:0005515(InterPro)
Pdy4g00956 1286 MobiDBLite consensus disorder prediction 36 53 - -
Pdy4g00956 1286 MobiDBLite consensus disorder prediction 59 73 - -
Pdy4g00956 1286 SUPERFAMILY WD40 repeat-like 203 474 IPR036322 GO:0005515(InterPro)
Pdy4g00956 1286 MobiDBLite consensus disorder prediction 605 620 - -
Pdy4g00956 1286 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 26 1286 IPR045152 GO:0000932(PANTHER)|GO:0031087(PANTHER)|GO:0031087(InterPro)
Pdy4g00956 1286 Coils Coil 870 890 - -
Pdy4g00956 1286 MobiDBLite consensus disorder prediction 593 627 - -
Pdy4g00956 1286 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 201 513 IPR032401 -
Pdy4g00956 1286 ProSiteProfiles Trp-Asp (WD) repeats profile. 367 409 IPR001680 GO:0005515(InterPro)
Pdy4g00956 1286 FunFam Enhancer of mRNA-decapping protein 4 1202 1286 - -
Pdy4g00956 1286 Gene3D - 204 561 IPR015943 GO:0005515(InterPro)
Pdy4g00956 1286 SMART WD40-4 241 281 IPR001680 GO:0005515(InterPro)
Pdy4g00956 1286 SMART WD40-4 403 449 IPR001680 GO:0005515(InterPro)
Pdy4g00956 1286 SMART WD40-4 361 400 IPR001680 GO:0005515(InterPro)
Pdy4g00956 1286 MobiDBLite consensus disorder prediction 1 173 - -
Pdy4g00956 1286 MobiDBLite consensus disorder prediction 88 104 - -
Pdy4g00956 1286 FunFam enhancer of mRNA-decapping protein 4 200 514 - -
Pdy4g00956 1286 Pfam Enhancer of mRNA-decapping protein 4, C-terminal 1159 1264 IPR049404 -
Pdy4g00956 1286 MobiDBLite consensus disorder prediction 1 35 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00956 K12616 enhancer of mRNA-decapping protein 4
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
132741 Pdy4g00956 Pdy9g02139
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:17976185 Pdy9g02139 Pdy-Chr9:45148093 wgd