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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00965 ATGGCGGATTTCACATGGATGCTTCACCAACAATCATCAAATCAAGTCGACCAAGTAAAATGGGCTAAACATTATAACTCCAATCATCAGATACTACTGGTAGGGGAAGGAGATTTCTCCTTTTCTCTTAGTCTGGCAATGGCGTTTGGTGATGCTTATAACATTGTAGCTACTTCTTTGGATTCTTATGATACTTTGATCGAGAAATACCAAAGTGCAAAATCAAACTTGGAACTCTTGACTATGTATGGAGCCAAGTTGTTACACGGGGTTGATGTGTCGAAAATGAAATTTCATACTGATCTTGTAATGCCAAAGTTTGATCGAATTATATACAATTTTCCACATGCCGGTTTTCAGGGGCGTGAAGATGATCCACAAGTAATCATGATGCATAAAAATCTGGTTTTTAGTTTTTTTGAGAATGCAAGTGGCATGTTGTGTGCAAACGGTGAAGTGCATGTAACACACAAGACTACAAGCCCGAACCAATGTTGGCATATTGAAAAACTCGCGGCTAAAAATTCTTTAGCCTTACTTGAACGGGTCGAGTTCAAACTTGAAGATTATCCCGGTTATAATAACAAAAGAGGAGATGGAAAGAGCCCTGACAGGGCGTTTCCTTTAGGAGAGTGCAGTACTTACAAGTTTATACTGTCTTCAGCAACTACAACTCCTTATCAACCCATTTCTTTATCACATAGAGCGAATGCGAGCCTGAACCATTCTCCTGTAATCAACTATTCTGAGCGTTCTCAGATCTTCAGGGAGTCTTTTCATCACACAGAATCGACAAATGGACGTGCTGATAATTTTTTGAAAGAGCTTCGTTATCAGAGAAATCGTTTGCTAGTACGCGCTTATGGGTATCAGTGGTAG 879 39.7 MADFTWMLHQQSSNQVDQVKWAKHYNSNHQILLVGEGDFSFSLSLAMAFGDAYNIVATSLDSYDTLIEKYQSAKSNLELLTMYGAKLLHGVDVSKMKFHTDLVMPKFDRIIYNFPHAGFQGREDDPQVIMMHKNLVFSFFENASGMLCANGEVHVTHKTTSPNQCWHIEKLAAKNSLALLERVEFKLEDYPGYNNKRGDGKSPDRAFPLGECSTYKFILSSATTTPYQPISLSHRANASLNHSPVINYSERSQIFRESFHHTESTNGRADNFLKELRYQRNRLLVRAYGYQW 292
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00965 292 PANTHER PHENYLALANYL-TRNA SYNTHETASE 13 198 - GO:0005737(PANTHER)|GO:0070042(PANTHER)|GO:0070475(PANTHER)
Pdy4g00965 292 FunFam Os09g0479300 protein 29 180 - -
Pdy4g00965 292 Pfam rRNA (uridine-N3-)-methyltransferase BTM5-like 32 197 IPR019446 GO:0070042(InterPro)|GO:0070475(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00965 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:18158556 Pdy4g00968 Pdy-Chr4:18229759 dispersed
Pdy Pdy-Chr4:18146455 Pdy4g00965 Pdy-Chr4:18158556 tandem
Pdy Pdy-Chr4:18158556 Pdy4g00966 Pdy-Chr4:18180258 tandem