AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00967 ATGGCGGATATCACTCTGAAGCATGAGCAAATAATCTCCATTGAAGACCACAAACTAACATGGGCTAAACATTATAACTCCAATCATCACATACTACTTGTAGGAGAAGGAGATTTCTCATTTTCTCAGAGTCTGGCAATGGCGTTTGGTTCTGCTTCTAACATTGTAGCTACTTCTTTGGATTCTCACGATGTTCTGATCAAGAAATACCAAAGAGCACAATCAAACTTGGAAATCTTGACTAATTATGGAGCAAAGTTGTTACACGGGATCAATGTGATGGAAACAATACTTAATACTGATCTTCAAACGCGAAAGTTTGATAGGATTATATACAATTTTCCACATGCCGGTTTTCTGGGGTTGGAAGATGATCCAGTTGTAATCATGGCACATAGAAATCTGGTTTTTAATTTTTTTAAGATTGCAAGTGGCATGTTGCGTGTAAGCGGTGAAGTACATGTGAGACACAAGACCACATACCCGTTCCAATGTTGGTATATTGAAGAACTCGCGGCTCAAAATTCTTTAGCCTTACTTGAACGTGTCAAGTTCAAACTTAAAGATTATCCCGGTTACAACAACAAAAGAGGAGCTGGAAAGGACGCTGATAAGCCCTTTCCTTTAGGGGAGTGCAGTACTTTCAAGTTCATATTGTCTTCAGCAACCAAGAAATCAACTAAAAATCCTTATCAACCCGAAACTTTTTTATCACAAAGAGCAAATGCGAGCCTGGTTATGAATCATGCTCCTGTACTATATTATTCTGAGTGCCCTCGGATCTTTAGGGAGTATTTTCATCACGCAGAATCGACATATGGACAGGTTGATAACTATCTTTCCTATTCTGTTCCATATATGCTGGGAATTGGGTTTGAAAGATGCAAAGCTGAAGATCGTGTGAATTTCTCGAGCAATTACATAAATCTTTTGAAAGAGCTTCAGGGTCTGAGTATACGCAGGATAGAGCTTCTGAGAAACCAAATGCTAGAACTCGATCATGGGTACCGCTTATAG 1017 39.13 MADITLKHEQIISIEDHKLTWAKHYNSNHHILLVGEGDFSFSQSLAMAFGSASNIVATSLDSHDVLIKKYQRAQSNLEILTNYGAKLLHGINVMETILNTDLQTRKFDRIIYNFPHAGFLGLEDDPVVIMAHRNLVFNFFKIASGMLRVSGEVHVRHKTTYPFQCWYIEELAAQNSLALLERVKFKLKDYPGYNNKRGAGKDADKPFPLGECSTFKFILSSATKKSTKNPYQPETFLSQRANASLVMNHAPVLYYSECPRIFREYFHHAESTYGQVDNYLSYSVPYMLGIGFERCKAEDRVNFSSNYINLLKELQGLSIRRIELLRNQMLELDHGYRL 338
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00967 338 Pfam rRNA (uridine-N3-)-methyltransferase BTM5-like 32 197 IPR019446 GO:0070042(InterPro)|GO:0070475(InterPro)
Pdy4g00967 338 PANTHER PHENYLALANYL-TRNA SYNTHETASE 21 209 - GO:0005737(PANTHER)|GO:0070042(PANTHER)|GO:0070475(PANTHER)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00967 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:18207118 Pdy4g01745 Pdy-Chr4:48606863 dispersed
Pdy Pdy-Chr4:18180258 Pdy4g00967 Pdy-Chr4:18207118 tandem
Pdy Pdy-Chr4:18207118 Pdy4g00968 Pdy-Chr4:18229759 tandem