AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g00994 ATGAAGCAACGTTTGATGGTTAGGGCACTCTCCAAAACCCTAACCCTGATTCCATCTTCTCGTGTTTCCTTCTCCTCCGCTTCATCCAGTTTTGCTATCAAGAATGTTACAAAATCCAACTTCGAATCGTCTCTGGCCGACCTCAGGCGCCATGTCAGAGACTCAGATTTCGTGTCAATTGACTTAGAAATGACAGGAGTCACGAGTGCGCCTTGGAGGGAGTCGTTTGAGTTCGACAGATACGATGTTCGTTATCTCAAGGTGAAGGACTCTGCTGAGAAGTTTGCAGTTGTACAGTTTGGAGTTTGCCCCTTTCGATGGGACCCCACCAAGCAGTCCTTCATTGCTCACCCGCACAACTTCTACATATTTCCACGACAAGAAGTTGGAGGTGATGACTCATCTTATGAGTTCCTGTGCCAGACTTCCTCAATTGATTTTTTGGCAAAGTACCAGTTTGATTTCAATTTGTGTGTAAAAGAAGGAGTATCTTATTTATCCAGAGCACTAGAAGATGAAGCTAGGTTGAAGTTACATTCAGTACATGAAGACGAGTTATCATCAGATATAGAACATGCTAAAGAAATCAAAGATGTACCAGTGATCAGAATGGCAGATATTCTTTTTGTGGAGAGAATGAGGAATAAGATCAGTGAATGGCACGATGACCTGTTACAGAACAGAAATGGGGAGTCTGGCTGGAGTCCTAAGGAAGACTCTCATGACTCAATTGATCAGTTTCAGGCCATCTTCTTTAGGATGCGTCCAGCCATTAAATTGAATGGATTCACTTCCCGCCAACTAAGGTTAATTAAGTCGGTTGTGGAAAAGAGCTTCAAAGATTTAGCTTACATCCGTGTAAATGATGATGGTTCAGGTTTTCAACAAATTATTGTCTACACAGACTCCAGAAGAGACCTAGAGTTGCTTATGAAAGATGTTAAAGAAAACCATTTCAAGGAAGCAGAGATGAAGATTGGAGCTGCCATTGGCTTCCGCCATGTGATTGATCTTCTTTCTTCTGAACAAAAGTTGATTGTTGGACACAATTGCTTTCTTGATATTGCACATATATGTAGAAAATTCGTGGGCCCTCTTCCTTCAAATCTTGAGGAATATGTATCGTTAGTTCAAAAAAACTTTCCATACATTATTGACACGAAGATCCTACTGAATGCAAATAACATATTGCAATTAAAGATGAAGAAGAGTAGCACATCACTTAATAAAGCTTTTGCAATTCTGTGTCCACATATTGCTTCTGGTATCAGCAGCTTTGGTTCGGCTTATAATTCTAATATTGCAGTGGAGGTTCAAGTGGATGATATGCGATCATCAAACTGGAACTCTGGAGCTAAGCATGAAGCCGGGTATGATGCTTTCATGACAGGGTGTATTTTTGCCCAAGCATGCAATCATATTGATATCAATTTCAGCTCTCACTCAATGTTGACGAAAGAAGAAAAGCTTCAAAACTACATCAATCGTCTCTACCTCAGCTGGACTAGTGGAGACATAGTTGACCTGAAAACTGGTCAAACTACAACAGAATCTTCAGCATTCAACAATTTCAAAACCCAACAACCTAAGATTCTGTTTCCAAATATTGTCTTAATTTGGGGATTCTCGCCCAAACTTAAGGCAAAGCAAATAAAAGATTCTTTGTGTAAAGTTTTTGGGTTGACCTCAGTTTCATCCATCTACCATTTGGATAAGAGTGCTGTGTTTGTTCAATTTAGCAAGCCGGAATTGGTTTCTGACTTTTTGGAACTGAAATCGAAGATGGAAAAGAAGAAGAACGATGCAATTTATGTTTTGCACCCCCTTTCAGAGCTTCTAGAAGGTGGATGTACCCGTGCTTCTAGTTATGAGGCATACAAAGACATTTGTGGTTCACCCATTTCCAAAGTATTGTTTGCTGATCAAGCTGAAGCTGTTGATGTTAATTGGAAAGCCCACAAAATTGATAATTTGCAATCCGCGATTGATGCCAACACAACAGAAAGCAACCAACTTATAAAGTCTTCATCAGGTGGCAGAAATATTCCTAGAGATGAAATCCTGAATTTGGTATCCTGCTGA 2082 40.11 MKQRLMVRALSKTLTLIPSSRVSFSSASSSFAIKNVTKSNFESSLADLRRHVRDSDFVSIDLEMTGVTSAPWRESFEFDRYDVRYLKVKDSAEKFAVVQFGVCPFRWDPTKQSFIAHPHNFYIFPRQEVGGDDSSYEFLCQTSSIDFLAKYQFDFNLCVKEGVSYLSRALEDEARLKLHSVHEDELSSDIEHAKEIKDVPVIRMADILFVERMRNKISEWHDDLLQNRNGESGWSPKEDSHDSIDQFQAIFFRMRPAIKLNGFTSRQLRLIKSVVEKSFKDLAYIRVNDDGSGFQQIIVYTDSRRDLELLMKDVKENHFKEAEMKIGAAIGFRHVIDLLSSEQKLIVGHNCFLDIAHICRKFVGPLPSNLEEYVSLVQKNFPYIIDTKILLNANNILQLKMKKSSTSLNKAFAILCPHIASGISSFGSAYNSNIAVEVQVDDMRSSNWNSGAKHEAGYDAFMTGCIFAQACNHIDINFSSHSMLTKEEKLQNYINRLYLSWTSGDIVDLKTGQTTTESSAFNNFKTQQPKILFPNIVLIWGFSPKLKAKQIKDSLCKVFGLTSVSSIYHLDKSAVFVQFSKPELVSDFLELKSKMEKKKNDAIYVLHPLSELLEGGCTRASSYEAYKDICGSPISKVLFADQAEAVDVNWKAHKIDNLQSAIDANTTESNQLIKSSSGGRNIPRDEILNLVSC 693
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g00994 693 Pfam CAF1 family ribonuclease 36 467 IPR006941 -
Pdy4g00994 693 PANTHER POLY A -SPECIFIC RIBONUCLEASE-TARGET OF EGR1, MEMBER 1 33 646 IPR051181 GO:0000175(PANTHER)|GO:0003723(PANTHER)|GO:0005737(PANTHER)
Pdy4g00994 693 SUPERFAMILY Ribonuclease H-like 33 480 IPR012337 -
Pdy4g00994 693 Gene3D - 35 202 IPR036397 GO:0003676(InterPro)
Pdy4g00994 693 Gene3D - 293 513 IPR036397 GO:0003676(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g00994 K01148 poly(A)-specific ribonuclease [EC:3.1.13.4]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:18674022 Pdy4g02405 Pdy-Chr4:68572417 dispersed