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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g01020 ATGCATTCTGCTATGTTTTCTATGCGTGTATCGAATGGTGCCACACAAGCTCTTGATCAAAGAAGGATATTTGGTGGTTACAATGAATCGGGTTTCTTGCATAAGCGTCTGCTGCATTTCAAGAAGAACTCAATGAGCTGGTGCAATAGTGGAAGGCTGTTATCAAACAATAGAATCCGATGTAGAGCTGTAGAGGTGGAAAGTATCCGAAGTTTTCTGAAAGGAGAAAAATTTCAACTTCATGATGTTATTGAAGCACAACAATTTGATAGAGATATACTCAGTGCCATATTTGAAGTTGCACGTGAAATGGAAACAATCGAGAAGAAGTCGTGTGGAAGCCAGATTTTGAATGGTTACCTAATGGCTACTCTCTTTTACGAGCCTTCAACTAGGACTAGGCTTTCATTTGAGTCTGCCATGAAGCGGTTGGGTGGTGAAGTTTTGACAACAGAAAATGCAAGAGAGTTCTCTTCTGCTGCAAAAGGGGAGACACTTGAAGATACTGTTAGAACTGTTGAAGGGTATTCGGACATAATTGTGATGAGGCACTTTGAAGGTGGTGCTGCTAGAAGAGCAGCCTTGACAGCTAATATTCCTGTTATCAATGCCGGGGATGGTCCAGGTCAGCATCCTACACAGGCCCTTCTTGACATGTACACCATTGAAAGAGAAATTGGAAAGCTGGATGGTATTAAAGTTGGACTTGTTGGGGATCTTGCTAATGGGCGAACAGTTCGGTCTCTTGCATATCTTTTAGCCAAATATAATGATGTGAAGATCTACCTTGTCTCACCACAGGTGGTAAAGATGAAGGAGGACATTAAAGAGTACTTAACATTAAAAGGAGTTGACTGGGAAGAGAGTGCCAATCTAAAGGAAGTGGCATCCAAATGTGATGTGGTGTACCAAACCCGCATCCAAAAAGAACGTTTTGGAGAGAGAACTGATCTCTATGAGGCAGCTCGAGGCAAGTACATTGTTGATCAAGATGTGTTGGGTGTCATGCAGAAGCATGCTGTCATCATGCATCCTCTCCCAAGGCTTGATGAGATAACGGTTGATGTTGATAAGGATCCAAGGGCTGCCTATTTTAGACAAGCGAAAAACGGGCTCTTTATTAGGATGGCTTTGTTGAAACTCTTACTTATTGGTTGGTGA 1161 42.29 MHSAMFSMRVSNGATQALDQRRIFGGYNESGFLHKRLLHFKKNSMSWCNSGRLLSNNRIRCRAVEVESIRSFLKGEKFQLHDVIEAQQFDRDILSAIFEVAREMETIEKKSCGSQILNGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDTVRTVEGYSDIIVMRHFEGGAARRAALTANIPVINAGDGPGQHPTQALLDMYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYNDVKIYLVSPQVVKMKEDIKEYLTLKGVDWEESANLKEVASKCDVVYQTRIQKERFGERTDLYEAARGKYIVDQDVLGVMQKHAVIMHPLPRLDEITVDVDKDPRAAYFRQAKNGLFIRMALLKLLLIGW 386
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g01020 386 Pfam Aspartate-ornithine carbamoyltransferase, carbamoyl-P binding domain 82 223 IPR006132 GO:0006520(InterPro)|GO:0016743(InterPro)
Pdy4g01020 386 FunFam Aspartate carbamoyltransferase 82 214 - -
Pdy4g01020 386 FunFam Aspartate carbamoyltransferase 2 215 370 - -
Pdy4g01020 386 Hamap Aspartate carbamoyltransferase [pyrB]. 80 385 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Pdy4g01020 386 Gene3D Aspartate-ornithine carbamoyltransferase 211 370 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Pdy4g01020 386 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 76 383 - -
Pdy4g01020 386 SUPERFAMILY Aspartate-ornithine carbamoyltransferase 78 383 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Pdy4g01020 386 NCBIfam aspartate carbamoyltransferase 82 383 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Pdy4g01020 386 PRINTS Aspartate carbamoyltransferase signature 116 138 - -
Pdy4g01020 386 PRINTS Aspartate carbamoyltransferase signature 156 165 - -
Pdy4g01020 386 PRINTS Aspartate carbamoyltransferase signature 302 311 - -
Pdy4g01020 386 PRINTS Aspartate carbamoyltransferase signature 364 378 - -
Pdy4g01020 386 PRINTS Aspartate carbamoyltransferase signature 210 227 - -
Pdy4g01020 386 PRINTS Aspartate carbamoyltransferase signature 342 347 - -
Pdy4g01020 386 Gene3D Aspartate-ornithine carbamoyltransferase 83 379 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Pdy4g01020 386 ProSitePatterns Aspartate and ornithine carbamoyltransferases signature. 126 133 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Pdy4g01020 386 Pfam Aspartate-ornithine carbamoyltransferase, Asp-Orn binding domain 230 381 IPR006131 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Pdy4g01020 386 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 211 222 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Pdy4g01020 386 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 338 347 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Pdy4g01020 386 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 348 371 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Pdy4g01020 386 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 126 145 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g01020 K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
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Event-related genes

Select Gene_1 Gene_2 Event_name
132012 Pdy3g00398 Pdy4g01020
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr3:7492654 Pdy4g01020 Pdy-Chr4:19180185 wgd