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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g01024 ATGCGAAGAGGAAGAGCAGGTACGGCGTCTAAACCGGTGGCTGCCGCTGCCGTTTTTGTCGCAGATGGATCTGGATCCAAGCCGGAAGTTAGGTTCAGAGGGGTTAGAAAAAGACCATGGGGTAGATTTGCAGCAGAAATCAGAGATCCATGGAAGAAAGCTAGGGTTTGGCTAGGTACTTTTGACTCCGCCGAGGATGCAGCACGCGCTTACGACGCCGCCGCGCGGAGTCTCCGAGGACCCAAAGCGAAAACCAATTTTCCGGTGACTACAAATTCCCCTTTTTACCATCAACAAAACCCTAACGATCATCACCCGTTTCTTGATCATCAAAGCCTGATGTACCACCATCCAAATCAACATCCGGAATACCAGATTGTCGTCCCGCAACGGCCGACCTGTAGCAGCCTGAGTAGTACGCTCGAGTCTTTCAGTGGACCCAGACCGCCGGTAAAGCCGGAATTTACTTTACCCCGAAGACATCATCCTCGTTCGCCTCCGATGTTCCCCGATGACTGCCGTAGCGACTGCGATTCGTCGTCATCTGTGGTTGTTGACGGCGTCGGTGACAATGGCGAAGCCGGAGAAATTGCTTCTTCTTCTTACACAAAACCCTTTCTTTCGTTTGATTTAAATAAGCCGCCGCCGTTTGATGAGTTTGAGCTTGCATTTCCGGCGGATGACGACCTTCAATGCACGGCGCTTCGACTTTGA 714 51.82 MRRGRAGTASKPVAAAAVFVADGSGSKPEVRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFPVTTNSPFYHQQNPNDHHPFLDHQSLMYHHPNQHPEYQIVVPQRPTCSSLSSTLESFSGPRPPVKPEFTLPRRHHPRSPPMFPDDCRSDCDSSSSVVVDGVGDNGEAGEIASSSYTKPFLSFDLNKPPPFDEFELAFPADDDLQCTALRL 237
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g01024 237 CDD AP2 31 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Pdy4g01024 237 MobiDBLite consensus disorder prediction 137 165 - -
Pdy4g01024 237 SMART rav1-2 31 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Pdy4g01024 237 Gene3D AP2-ERF domain 30 90 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Pdy4g01024 237 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Pdy4g01024 237 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Pdy4g01024 237 SUPERFAMILY DNA-binding domain 32 89 IPR016177 GO:0003677(InterPro)
Pdy4g01024 237 ProSiteProfiles AP2-ERF domain profile. 31 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Pdy4g01024 237 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 188 - -
Pdy4g01024 237 Pfam AP2 domain 31 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Pdy4g01024 237 FunFam Ethylene-responsive transcription factor 2 31 89 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g01024 K09286 EREBP-like factor
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Event-related genes

Select Gene_1 Gene_2 Event_name
132753 Pdy4g01024 Pdy9g02020
132754 Pdy4g01024 Pdy9g02077
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:19241866 Pdy9g01762 Pdy-Chr9:40725964 dispersed
Pdy Pdy-Chr1:97875986 Pdy4g01024 Pdy-Chr4:19241866 wgd
Pdy Pdy-Chr2:81294641 Pdy4g01024 Pdy-Chr4:19241866 wgd
Pdy Pdy-Chr2:81059228 Pdy4g01024 Pdy-Chr4:19241866 wgd
Pdy Pdy-Chr4:19241866 Pdy5g03219 Pdy-Chr5:85200487 wgd
Pdy Pdy-Chr4:19241866 Pdy9g02077 Pdy-Chr9:44496367 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Pdy1g00417 . 8 77 CBF gene family AT5G19790 65.714 5.93e-26 102.0
Pdy1g00439 ACH 1 199 CBF gene family AT1G15360 59.709 1.29e-73 219.0
Pdy1g00518 . 40 225 CBF gene family AT5G11590 57.812 8.05e-63 194.0
Pdy1g00598 ACH 5 160 CBF gene family AT2G36450 66.026 1.43e-55 172.0
Pdy1g00783 . 1 230 CBF gene family AT5G61600 40.0 4.05e-41 138.0
Pdy1g00821 ACH 68 382 CBF gene family AT4G13620 37.736 1.76e-48 163.0
Pdy1g02218 . 2 332 CBF gene family AT1G78080 49.249 2.06e-89 268.0
Pdy1g02691 . 13 83 CBF gene family AT1G50640 70.423 6.54e-29 104.0
Pdy1g02721 ACH 16 133 CBF gene family AT3G23230 53.077 5.40e-40 130.0
Pdy1g02724 ACH 7 217 CBF gene family AT3G23240 53.125 5.26e-71 214.0
Pdy1g02845 ACH 111 201 CBF gene family AT4G13040 74.725 6.42e-45 148.0
Pdy1g02925 ACH 11 264 CBF gene family AT4G27950 35.115 6.43e-39 137.0
Pdy1g03777 . 26 269 CBF gene family AT4G28140 44.521 7.85e-58 188.0
Pdy1g03824 . 22 129 CBF gene family AT3G15210 58.333 5.83e-33 117.0
Pdy1g04166 ACH 3 330 CBF gene family AT4G27950 40.974 2.93e-56 184.0
Pdy1g04308 ACH 50 213 CBF gene family AT5G51190 45.665 3.48e-42 142.0
Pdy1g04371 . 8 258 CBF gene family AT2G40340 42.023 1.34e-52 174.0
Pdy1g04370 . 8 258 CBF gene family AT2G40340 42.023 1.21e-52 174.0
Pdy1g04525 ACH 60 308 CBF gene family AT4G36920 67.063 2.94e-95 293.0
Pdy1g05128 ACH 1 341 CBF gene family AT1G13260 60.0 8.95e-137 390.0
Pdy1g05150 ACH 33 299 CBF gene family AT1G68550 34.076 4.34e-36 131.0
Pdy1g05151 ACH 37 174 CBF gene family AT1G68550 41.892 1.12e-23 95.5
Pdy1g05267 . 1 295 CBF gene family AT1G24590 38.907 4.15e-48 162.0
Pdy1g05430 . 19 95 CBF gene family AT5G19790 73.418 8.32e-33 121.0
Pdy2g00028 ACH 5 361 CBF gene family AT1G25560 54.545 2.20e-132 382.0
Pdy2g00065 ACH 13 317 CBF gene family AT1G68550 37.059 1.73e-38 137.0
Pdy2g01158 . 81 153 CBF gene family AT2G44840 65.753 2.65e-29 108.0
Pdy2g01164 . 91 153 CBF gene family AT2G44840 71.429 1.77e-28 108.0
Pdy2g01165 . 91 170 CBF gene family AT2G44840 65.0 2.77e-33 119.0
Pdy2g01271 . 94 290 CBF gene family AT2G44940 48.756 1.91e-46 154.0
Pdy2g01273 . 94 292 CBF gene family AT2G44940 45.813 1.66e-46 154.0
Pdy2g01274 . 95 292 CBF gene family AT2G44940 45.545 1.40e-45 151.0
Pdy2g01278 ACH 94 292 CBF gene family AT2G44940 47.059 2.41e-48 158.0
Pdy2g01287 . 79 168 CBF gene family AT2G44840 71.111 2.19e-42 140.0
Pdy2g01290 . 79 195 CBF gene family AT2G44840 57.724 6.93e-42 139.0
Pdy2g01292 . 79 195 CBF gene family AT2G44840 57.724 8.68e-43 141.0
Pdy2g01488 . 13 301 CBF gene family AT4G18450 36.57 1.32e-42 146.0
Pdy2g01489 . 70 208 CBF gene family AT4G17500 50.36 5.67e-42 139.0
Pdy2g01544 ACH 20 116 CBF gene family AT3G15210 70.192 6.45e-39 132.0
Pdy2g01546 ACH 8 189 CBF gene family AT1G28360 47.917 3.04e-47 150.0
Pdy2g02368 . 72 159 CBF gene family AT5G51190 61.798 5.04e-28 109.0
Pdy2g02374 . 1 251 CBF gene family AT5G47230 39.544 2.56e-39 137.0
Pdy2g02602 . 1 321 CBF gene family AT5G18560 38.938 1.07e-51 172.0
Pdy2g02784 . 16 183 CBF gene family AT1G71450 53.409 8.38e-55 170.0
Pdy2g02934 ACH 19 335 CBF gene family AT1G64380 46.037 8.29e-58 186.0
Pdy2g02951 ACH 5 343 CBF gene family AT4G23750 40.616 1.70e-58 190.0
Pdy2g03050 . 32 222 CBF gene family AT5G51990 52.764 1.84e-63 195.0
Pdy2g03051 ACH 59 231 CBF gene family AT5G52020 54.348 2.90e-46 149.0
Pdy2g03225 . 45 234 CBF gene family AT3G54320 72.449 3.67e-90 278.0
Pdy2g03325 ACH 1 179 CBF gene family AT5G25190 65.079 1.85e-76 225.0
Pdy2g03418 . 9 212 CBF gene family AT5G11590 54.808 5.34e-65 200.0
Pdy2g03602 ACH 118 309 CBF gene family AT4G36920 74.872 2.75e-86 269.0
Pdy2g03822 ACH 33 220 CBF gene family AT5G51990 49.746 3.44e-57 179.0
Pdy2g03959 . 1 568 CBF gene family AT1G51190 62.017 0.0 648.0
Pdy2g04043 . 12 252 CBF gene family AT5G19790 45.725 3.75e-54 174.0
Pdy2g04149 ACH 122 382 CBF gene family AT4G13620 43.011 1.25e-60 196.0
Pdy3g00059 . 50 154 CBF gene family AT1G21910 65.714 8.31e-40 134.0
Pdy3g00151 ACH 2 332 CBF gene family AT1G78080 46.648 4.30e-78 240.0
Pdy3g00533 ACH 45 178 CBF gene family AT1G80580 56.463 5.37e-30 110.0
Pdy3g00589 ACH 33 176 CBF gene family AT5G61890 57.241 1.51e-47 155.0
Pdy3g00993 . 15 116 CBF gene family AT1G75490 60.784 3.53e-41 139.0
Pdy3g01785 . 2 197 CBF gene family AT1G15360 53.953 7.28e-66 199.0
Pdy3g02661 ACH 1 555 CBF gene family AT4G37750 44.493 1.84e-153 452.0
Pdy3g02714 ACH 18 168 CBF gene family AT2G23340 60.265 1.33e-52 163.0
Pdy3g02729 ACH 1 314 CBF gene family AT4G36920 67.733 5.35e-125 369.0
Pdy3g03283 ACH 36 193 CBF gene family AT1G68550 40.741 4.72e-22 92.0
Pdy3g04082 . 36 166 CBF gene family AT5G13330 59.42 1.36e-45 152.0
Pdy3g04108 . 27 334 CBF gene family AT1G50680 49.838 5.31e-85 257.0
Pdy3g04359 . 17 183 CBF gene family AT1G71450 46.939 7.42e-55 171.0
Pdy3g04393 ACH 1 243 CBF gene family AT3G16770 40.0 1.20e-52 169.0
Pdy3g04713 ACH 17 335 CBF gene family AT1G64380 45.833 1.78e-64 204.0
Pdy3g04730 ACH 12 343 CBF gene family AT4G23750 43.714 3.36e-66 210.0
Pdy3g04850 . 53 231 CBF gene family AT5G52020 53.039 1.34e-44 147.0
Pdy3g04852 ACH 53 231 CBF gene family AT5G52020 52.198 3.74e-42 140.0
Pdy4g00590 ACH 1 131 CBF gene family AT3G15210 59.286 8.67e-40 134.0
Pdy4g00629 . 139 209 CBF gene family AT4G28140 70.423 1.71e-31 115.0
Pdy4g01024 ACH 1 225 CBF gene family AT1G50640 54.472 3.82e-53 169.0
Pdy4g02362 ACH 1 282 CBF gene family AT4G27950 35.64 8.00e-40 138.0
Pdy4g02437 . 18 212 CBF gene family AT5G11590 53.234 3.92e-52 167.0
Pdy4g02713 . 14 343 CBF gene family AT1G16060 53.388 7.08e-109 320.0
Pdy4g03059 ACH 111 224 CBF gene family AT4G13040 59.322 1.27e-40 137.0
Pdy4g03164 ACH 6 88 CBF gene family AT5G21960 71.084 2.35e-39 130.0
Pdy4g03165 . 7 185 CBF gene family AT1G19210 52.406 1.58e-52 164.0
Pdy4g03406 ACH 35 435 CBF gene family AT2G28550 46.667 4.02e-83 261.0
Pdy4g03474 ACH 36 184 CBF gene family AT3G23240 54.545 2.04e-56 176.0
Pdy4g03479 ACH 16 138 CBF gene family AT3G23230 61.905 2.27e-45 143.0
Pdy4g03627 . 1 169 CBF gene family AT2G47520 42.324 1.47e-49 158.0
Pdy4g03693 . 77 174 CBF gene family AT2G44840 57.143 1.53e-28 110.0
Pdy4g03756 ACH 100 292 CBF gene family AT2G44940 52.551 5.13e-53 172.0
Pdy4g03864 . 21 78 CBF gene family AT5G19790 77.586 1.71e-27 105.0
Pdy4g03972 . 9 292 CBF gene family AT2G46310 37.584 7.95e-42 144.0
Pdy4g04038 . 61 186 CBF gene family AT2G44840 53.543 2.52e-34 122.0
Pdy4g04339 ACH 1 90 CBF gene family AT5G44210 70.0 1.45e-37 129.0
Pdy4g04342 ACH 1 189 CBF gene family AT1G28360 52.792 1.14e-47 152.0
Pdy5g00159 . 32 235 CBF gene family AT5G11590 52.381 3.37e-60 187.0
Pdy5g00690 ACH 2 178 CBF gene family AT5G67190 53.672 2.19e-55 170.0
Pdy5g02362 ACH 17 139 CBF gene family AT3G23230 61.6 1.46e-47 148.0
Pdy5g02363 ACH 37 215 CBF gene family AT3G23240 53.191 2.95e-58 181.0
Pdy5g02576 ACH 12 216 CBF gene family AT4G27950 39.806 8.36e-40 139.0
Pdy5g02831 . 35 422 CBF gene family AT2G41710 62.438 9.15e-150 430.0
Pdy5g02868 . 4 272 CBF gene family AT3G57600 53.285 5.67e-83 249.0
Pdy5g03064 ACH 1 449 CBF gene family AT2G28550 45.972 3.73e-95 293.0
Pdy5g03165 ACH 17 332 CBF gene family AT1G78080 52.226 5.70e-88 265.0
Pdy5g03219 ACH 57 135 CBF gene family AT2G33710 72.152 2.81e-35 127.0
Pdy6g00021 ACH 15 107 CBF gene family AT5G13330 61.0 2.41e-34 124.0
Pdy6g00088 ACH 2 332 CBF gene family AT1G78080 49.405 2.24e-89 268.0
Pdy6g00247 ACH 1 217 CBF gene family AT3G23240 48.908 3.66e-63 194.0
Pdy6g00381 . 6 584 CBF gene family AT5G17430 44.207 6.64e-137 410.0
Pdy6g00535 ACH 18 216 CBF gene family AT5G51190 44.495 3.49e-53 171.0
Pdy6g00620 . 16 222 CBF gene family AT5G51990 54.795 2.10e-74 223.0
Pdy6g00621 . 32 222 CBF gene family AT5G51990 58.549 1.16e-71 215.0
Pdy6g00630 ACH 23 222 CBF gene family AT5G51990 54.187 1.70e-68 207.0
Pdy6g00631 . 5 222 CBF gene family AT5G51990 50.446 6.14e-69 208.0
Pdy6g00632 . 9 222 CBF gene family AT5G51990 51.802 3.94e-66 201.0
Pdy6g00637 ACH 7 222 CBF gene family AT5G51990 49.333 1.18e-65 200.0
Pdy6g00898 ACH 42 149 CBF gene family AT2G40220 64.957 8.49e-30 108.0
Pdy6g01446 . 1 229 CBF gene family AT1G21910 40.741 1.14e-39 134.0
Pdy6g01532 . 70 472 CBF gene family AT4G37750 55.944 1.03e-147 432.0
Pdy6g02190 ACH 19 95 CBF gene family AT5G19790 71.605 5.53e-32 118.0
Pdy6g02392 . 24 196 CBF gene family AT4G34410 46.552 4.52e-30 109.0
Pdy6g02393 . 43 117 CBF gene family AT2G47520 58.667 2.98e-27 99.0
Pdy6g02419 ACH 1 324 CBF gene family AT4G36920 64.543 1.15e-121 360.0
Pdy6g02424 ACH 16 168 CBF gene family AT2G23340 58.824 1.21e-53 166.0
Pdy6g02530 ACH 1 555 CBF gene family AT4G37750 47.692 5.87e-152 444.0
Pdy6g02821 . 6 138 CBF gene family AT1G22810 54.887 1.66e-46 146.0
Pdy6g02906 ACH 1 178 CBF gene family AT5G67190 52.174 2.87e-51 159.0
Pdy6g03463 ACH 22 172 CBF gene family AT5G61890 56.41 2.05e-51 166.0
Pdy6g03494 . 11 343 CBF gene family AT1G16060 58.678 6.20e-121 351.0
Pdy6g03521 . 1 178 CBF gene family AT5G25190 64.246 1.01e-68 205.0
Pdy6g03531 ACH 70 241 CBF gene family AT1G80580 49.198 4.83e-31 114.0
Pdy6g03573 ACH 1 199 CBF gene family AT1G15360 62.326 6.83e-80 235.0
Pdy6g03655 ACH 21 211 CBF gene family AT5G11590 47.596 5.29e-49 159.0
Pdy6g03828 ACH 1 358 CBF gene family AT1G53910 44.92 1.72e-64 205.0
Pdy7g00169 . 18 139 CBF gene family AT3G23230 56.452 4.51e-38 124.0
Pdy7g00170 . 14 139 CBF gene family AT3G23230 55.469 1.02e-39 129.0
Pdy7g01037 . 4 91 CBF gene family AT5G13910 80.682 2.12e-45 150.0
Pdy7g01560 ACH 23 202 CBF gene family AT4G34410 46.277 3.35e-37 129.0
Pdy7g01972 ACH 1 358 CBF gene family AT1G53910 43.968 5.71e-59 192.0
Pdy7g02054 ACH 49 220 CBF gene family AT5G11590 55.814 8.99e-53 167.0
Pdy7g02134 ACH 5 199 CBF gene family AT1G15360 63.077 1.87e-71 213.0
Pdy7g02182 ACH 7 131 CBF gene family AT3G15210 61.654 5.05e-41 138.0
Pdy7g02311 . 28 220 CBF gene family AT5G11590 55.072 4.25e-60 188.0
Pdy7g02609 ACH 4 225 CBF gene family AT1G50640 50.0 2.20e-41 138.0
Pdy8g00809 ACH 11 183 CBF gene family AT2G36450 59.77 2.14e-54 169.0
Pdy8g01198 ACH 46 382 CBF gene family AT4G13620 41.643 5.12e-74 231.0
Pdy8g01388 . 8 251 CBF gene family AT5G19790 43.609 5.69e-57 181.0
Pdy8g01546 . 37 395 CBF gene family AT3G54320 53.315 1.39e-108 323.0
Pdy8g01728 . 1 569 CBF gene family AT5G10510 50.667 1.70e-148 436.0
Pdy8g01754 . 80 211 CBF gene family AT3G23240 59.398 1.96e-44 144.0
Pdy8g02112 ACH 19 170 CBF gene family AT2G23340 59.615 1.44e-51 160.0
Pdy8g02113 ACH 1 338 CBF gene family AT4G36920 58.445 4.81e-120 357.0
Pdy8g02252 ACH 19 95 CBF gene family AT5G19790 71.25 2.07e-31 118.0
Pdy8g02280 . 28 234 CBF gene family AT3G54320 70.233 3.34e-94 286.0
Pdy8g02666 ACH 116 312 CBF gene family AT4G36920 80.303 3.28e-97 298.0
Pdy8g02753 ACH 38 218 CBF gene family AT3G23240 48.148 2.12e-57 180.0
Pdy8g02754 . 36 218 CBF gene family AT3G23240 52.792 7.00e-63 193.0
Pdy8g02755 . 36 217 CBF gene family AT3G23240 57.068 5.79e-69 208.0
Pdy8g02977 ACH 1 321 CBF gene family AT2G28550 49.148 4.94e-69 224.0
Pdy8g03179 ACH 40 150 CBF gene family AT2G40220 69.672 2.23e-35 129.0
Pdy8g03282 ACH 42 239 CBF gene family AT4G17500 56.311 1.30e-69 213.0
Pdy8g03284 ACH 43 216 CBF gene family AT5G51190 53.403 1.24e-57 182.0
Pdy8g03355 . 1 222 CBF gene family AT5G51990 52.521 4.81e-74 222.0
Pdy8g03357 ACH 61 231 CBF gene family AT5G52020 48.276 7.55e-39 130.0
Pdy8g03358 ACH 54 231 CBF gene family AT5G52020 50.829 1.26e-42 140.0
Pdy8g03431 ACH 3 301 CBF gene family AT4G27950 41.566 1.04e-62 203.0
Pdy9g00036 ACH 9 185 CBF gene family AT1G19210 45.333 1.65e-51 163.0
Pdy9g00164 . 11 180 CBF gene family AT4G32800 56.647 1.44e-56 177.0
Pdy9g01643 ACH 20 199 CBF gene family AT4G34410 46.392 5.87e-37 130.0
Pdy9g01762 ACH 1 164 CBF gene family AT1G50640 54.268 2.14e-40 135.0
Pdy9g02077 ACH 4 225 CBF gene family AT1G50640 47.009 6.40e-44 145.0
Pdy9g02530 ACH 1 218 CBF gene family AT3G16770 40.948 1.44e-44 148.0
Pdy9g02588 . 50 229 CBF gene family AT1G21910 44.444 2.61e-38 130.0
Pdy9g02589 . 50 229 CBF gene family AT1G21910 47.264 4.26e-43 142.0
Pdy9g02673 . 91 141 CBF gene family AT5G61600 72.549 1.43e-23 87.4
Pdy9g02686 ACH 9 328 CBF gene family AT4G27950 40.06 6.29e-51 170.0
Pdy9g02845 . 26 134 CBF gene family AT5G11590 65.455 8.62e-47 153.0
Pdy9g02868 . 1 206 CBF gene family AT4G17490 39.72 2.84e-37 129.0
Pdy9g02869 . 9 240 CBF gene family AT4G17500 53.419 1.78e-70 214.0
Pdy9g03048 . 8 212 CBF gene family AT3G23240 56.731 6.79e-66 200.0
Pdy9g03130 . 91 160 CBF gene family AT2G44840 68.571 9.10e-33 118.0
Pdy9g03133 . 78 170 CBF gene family AT2G44840 65.591 3.91e-40 134.0
Pdy9g03146 . 87 292 CBF gene family AT2G44940 45.622 3.12e-50 164.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Pdy AP2 8.7e-14 CL0081 TF AP2/ERF-ERF