AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pdy4g01056 | ATGGACCTCATAAGCAACACTACTTCTACCTCCTTCTCCGACGTCGCCGCCAACCTCGCTACTACTCACCGTCAGGTCGTTCCGATCACGTTGTTCGTCGCCGTACTGTGTCTCTGTTTAGTAATCGGACACCTGCTTGACGAGTATCGATGGGTTAACGAGTCGATTACCGCCATCATCATCGGGTGTATTGTTGGGGTTATTATCTTAATCACAAGCAAGTGGAAAAGCTCTCATTTGCTGAGATTTGATGAAGAACTCTTCTTCATTTATCTACTTCCACCAATAATTTTCAATGCAGGATTTCAGGTGAAGAAGAAACAGTTTTTTCATAACTTTTTCCCTATTATGCTGTTCGGAGTTATTGGTGTTTTCATATCCACAACCATCGTTGCCGCCGGTTGCTGGTGGCTGTTCCCAAAATTAGGGCTCAAGGGTTTGACTATCAGCGAGTATCTTAGTGTAGGGACCATTTTCTCATCTACAGATACTGTATGCACATTACAGGTTTTGCATCAAGATGAGACTCCTTTGCTATACAGTTTAGTTTTTGGTGAAGGAGTAGTAAATGATGCAACATCAGTTGTTCTATTCAACACTGTTCAGAAGATCAATGCAAATACACTTGGTGGCAAGGCTGCTTTAAGAGTCTTGTTAGATTTCTTGTATTTATTCTCTACAAGCACTGTTCTTGGTGTCACTGCGGGGCTTTTGACTTCATATATTCTTAGAGGCTTGGGCTTTGGAAGGCATTCAAGTGTTCGTGAAATTTCGTTGATGATTCTGGTAGCATATTTGTCCTACACGTTGGCAGAGCTATTTGAACTCAGTGGGATTCTGACTGTGTTTTTTGCTGGAGTTTTGATGTCACACTATGCATGGCATAATGTAACTGAAAGCTCCAGGATCACAACCAAGCATACTTTTGCAGCAATGTCTTTTATTGCGGAAACATTCATATTCCTGTATGTGGGAATGGATGCACTCGACTATGAGAAGTGGAAAATGAGCATATTAAGTTTTTGGACTTCAATAGGCATATATGGCACGGTGATGTTGTTGATATTGCTTGGACGTGCTGCATTTGTGTTTCCCCTTTCTTTTATTGCTAATTACATGAATAAAGCTGGGGCGACCTCATCAAAAGTCACAGGACAACACCAGGTAGTAATATGGTGGGCTGGTCTGATGAGAGGGGCCGTTTCTGTCGCTTTGGCATTCAAACAGTTTACTCTCTCTGGTGTGACACTAGATCCGATCAATGCCACAATGATCACCACCACTAACGTGATCGTGTTATTCAGTACTGTTGTGTTTGGTTTCTTGACAAAACCACTTATTAGATATCTTCTACCACCTAACACAAGTAACAACGGTCCATCTAGAACTACGTCTGTCAAAGAGGATATGACACTTCCATTGCTTTCTTTTGAAGAATCGGCTTCTGAAAATCTCGCTAGAGCAAAAGAGAACATATCAATGTTAATGGAAAGACCCGTGTACACAATCCACTCGTATTGGAGAAGATTCGACGACACCTACATGCGACCTATATTTGGCGGGGCCCGTAGCACTGACCTCCCATAG | 1587 | 42.28 | MDLISNTTSTSFSDVAANLATTHRQVVPITLFVAVLCLCLVIGHLLDEYRWVNESITAIIIGCIVGVIILITSKWKSSHLLRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFFPIMLFGVIGVFISTTIVAAGCWWLFPKLGLKGLTISEYLSVGTIFSSTDTVCTLQVLHQDETPLLYSLVFGEGVVNDATSVVLFNTVQKINANTLGGKAALRVLLDFLYLFSTSTVLGVTAGLLTSYILRGLGFGRHSSVREISLMILVAYLSYTLAELFELSGILTVFFAGVLMSHYAWHNVTESSRITTKHTFAAMSFIAETFIFLYVGMDALDYEKWKMSILSFWTSIGIYGTVMLLILLGRAAFVFPLSFIANYMNKAGATSSKVTGQHQVVIWWAGLMRGAVSVALAFKQFTLSGVTLDPINATMITTTNVIVLFSTVVFGFLTKPLIRYLLPPNTSNNGPSRTTSVKEDMTLPLLSFEESASENLARAKENISMLMERPVYTIHSYWRRFDDTYMRPIFGGARSTDLP | 528 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pdy4g01056 | 528 | Gene3D | - | 148 | 200 | - | - | |
| Pdy4g01056 | 528 | Coils | Coil | 478 | 498 | - | - | |
| Pdy4g01056 | 528 | PRINTS | Na+-H+ exchanger signature | 156 | 166 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Pdy4g01056 | 528 | PRINTS | Na+-H+ exchanger signature | 87 | 98 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Pdy4g01056 | 528 | PRINTS | Na+-H+ exchanger signature | 101 | 115 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Pdy4g01056 | 528 | PRINTS | Na+-H+ exchanger signature | 116 | 124 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Pdy4g01056 | 528 | Pfam | Sodium-hydrogen exchanger family | 40 | 447 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Pdy4g01056 | 528 | PANTHER | SODIUM-HYDROGEN EXCHANGER | 22 | 523 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| Pdy4g01056 | 528 | NCBIfam | sodium-hydrogen exchanger 3 | 25 | 486 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pdy4g01056 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 132760 | Pdy4g01056 | Pdy9g02094 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Pdy | Pdy-Chr4:20155394 | Pdy9g02322 | Pdy-Chr9:47362327 | dispersed | |
| Pdy | Pdy-Chr4:20155394 | Pdy9g02094 | Pdy-Chr9:44653586 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Pdy1g00237 | ACH | 1 | 818 | Antiporters gene family | AT3G53720 | 56.643 | 0.0 | 824.0 | |
| Pdy1g00416 | . | 9 | 656 | Antiporters gene family | AT5G25430 | 64.969 | 0.0 | 890.0 | |
| Pdy1g00661 | . | 1 | 557 | Antiporters gene family | AT5G12860 | 81.449 | 0.0 | 882.0 | |
| Pdy1g00669 | ACH | 58 | 385 | Antiporters gene family | AT5G13490 | 81.402 | 0.0 | 524.0 | |
| Pdy1g01371 | . | 24 | 801 | Antiporters gene family | AT3G52080 | 45.315 | 0.0 | 714.0 | |
| Pdy1g02046 | . | 1 | 410 | Antiporters gene family | AT5G46110 | 77.99 | 0.0 | 637.0 | |
| Pdy1g02091 | . | 30 | 283 | Antiporters gene family | AT1G79900 | 28.214 | 1.58e-33 | 122.0 | |
| Pdy1g02318 | ACH | 1 | 450 | Antiporters gene family | AT2G38170 | 61.039 | 0.0 | 528.0 | |
| Pdy1g02500 | . | 1 | 539 | Antiporters gene family | AT2G47600 | 65.138 | 0.0 | 709.0 | |
| Pdy1g02550 | ACH | 15 | 534 | Antiporters gene family | AT3G05030 | 64.491 | 0.0 | 674.0 | |
| Pdy1g03010 | . | 29 | 440 | Antiporters gene family | AT2G38170 | 59.709 | 2.37e-164 | 469.0 | |
| Pdy1g04258 | . | 21 | 566 | Antiporters gene family | AT5G51710 | 78.022 | 0.0 | 857.0 | |
| Pdy2g00208 | . | 81 | 406 | Antiporters gene family | AT5G46110 | 80.357 | 0.0 | 557.0 | |
| Pdy2g01169 | . | 27 | 526 | Antiporters gene family | AT5G55470 | 30.814 | 1.18e-54 | 191.0 | |
| Pdy2g01326 | . | 1 | 385 | Antiporters gene family | AT5G13490 | 77.577 | 0.0 | 588.0 | |
| Pdy2g02747 | . | 38 | 584 | Antiporters gene family | AT2G19600 | 79.928 | 0.0 | 852.0 | |
| Pdy2g03642 | ACH | 40 | 566 | Antiporters gene family | AT5G17860 | 47.955 | 1.95e-165 | 481.0 | |
| Pdy2g03948 | ACH | 1 | 385 | Antiporters gene family | AT5G13490 | 80.26 | 0.0 | 598.0 | |
| Pdy3g00445 | ACH | 1 | 387 | Antiporters gene family | AT5G54800 | 72.414 | 0.0 | 553.0 | |
| Pdy3g00733 | ACH | 1 | 404 | Antiporters gene family | AT5G33320 | 64.078 | 1.95e-174 | 491.0 | |
| Pdy3g00735 | ACH | 1 | 687 | Antiporters gene family | AT3G62270 | 75.827 | 0.0 | 1087.0 | |
| Pdy3g01744 | . | 9 | 663 | Antiporters gene family | AT5G25430 | 65.396 | 0.0 | 908.0 | |
| Pdy3g01923 | . | 33 | 1142 | Antiporters gene family | AT2G01980 | 64.522 | 0.0 | 1390.0 | |
| Pdy3g02112 | . | 93 | 563 | Antiporters gene family | AT5G64290 | 70.701 | 0.0 | 701.0 | |
| Pdy3g02376 | ACH | 14 | 783 | Antiporters gene family | AT1G79400 | 37.98 | 7.76e-176 | 522.0 | |
| Pdy3g04285 | . | 13 | 543 | Antiporters gene family | AT3G05030 | 74.388 | 0.0 | 822.0 | |
| Pdy3g04340 | . | 10 | 298 | Antiporters gene family | AT5G17400 | 37.415 | 3.47e-61 | 196.0 | |
| Pdy3g04567 | ACH | 30 | 283 | Antiporters gene family | AT1G79900 | 34.276 | 8.11e-42 | 144.0 | |
| Pdy3g04740 | . | 1 | 795 | Antiporters gene family | AT4G23700 | 65.578 | 0.0 | 1042.0 | |
| Pdy3g04942 | . | 6 | 811 | Antiporters gene family | AT2G13620 | 71.658 | 0.0 | 1157.0 | |
| Pdy3g04972 | . | 205 | 295 | Antiporters gene family | AT1G79900 | 30.435 | 7.78e-08 | 48.5 | |
| Pdy4g00069 | . | 48 | 575 | Antiporters gene family | AT3G19490 | 81.664 | 0.0 | 816.0 | |
| Pdy4g01056 | ACH | 9 | 527 | Antiporters gene family | AT5G55470 | 69.75 | 0.0 | 753.0 | |
| Pdy4g02096 | . | 37 | 844 | Antiporters gene family | AT5G37060 | 42.857 | 0.0 | 686.0 | |
| Pdy4g02244 | ACH | 6 | 438 | Antiporters gene family | AT3G51860 | 70.709 | 0.0 | 567.0 | |
| Pdy4g03148 | ACH | 57 | 564 | Antiporters gene family | AT5G17860 | 42.987 | 5.74e-138 | 413.0 | |
| Pdy4g04048 | . | 1 | 385 | Antiporters gene family | AT5G13490 | 78.406 | 0.0 | 586.0 | |
| Pdy4g04488 | . | 53 | 387 | Antiporters gene family | AT1G61800 | 79.592 | 0.0 | 552.0 | |
| Pdy5g00016 | . | 29 | 440 | Antiporters gene family | AT1G55730 | 68.981 | 0.0 | 587.0 | |
| Pdy5g00064 | . | 55 | 566 | Antiporters gene family | AT5G17860 | 43.321 | 3.35e-144 | 429.0 | |
| Pdy5g00185 | . | 1 | 287 | Antiporters gene family | AT1G79900 | 66.33 | 1.31e-137 | 389.0 | |
| Pdy5g00206 | ACH | 6 | 619 | Antiporters gene family | AT1G15460 | 70.358 | 0.0 | 914.0 | |
| Pdy5g00448 | ACH | 33 | 408 | Antiporters gene family | AT5G33320 | 63.542 | 3.76e-159 | 452.0 | |
| Pdy5g02059 | . | 1 | 697 | Antiporters gene family | AT2G47160 | 79.944 | 0.0 | 1140.0 | |
| Pdy5g02182 | ACH | 9 | 534 | Antiporters gene family | AT3G05030 | 62.991 | 0.0 | 678.0 | |
| Pdy6g00838 | . | 13 | 479 | Antiporters gene family | AT3G05030 | 32.432 | 8.15e-55 | 191.0 | |
| Pdy6g03046 | . | 6 | 302 | Antiporters gene family | AT5G17400 | 75.168 | 1.12e-163 | 455.0 | |
| Pdy6g03217 | ACH | 1 | 404 | Antiporters gene family | AT5G33320 | 66.425 | 0.0 | 509.0 | |
| Pdy6g03218 | ACH | 1 | 687 | Antiporters gene family | AT3G62270 | 76.868 | 0.0 | 1091.0 | |
| Pdy6g03593 | ACH | 6 | 672 | Antiporters gene family | AT1G15460 | 70.92 | 0.0 | 995.0 | |
| Pdy6g03628 | . | 1 | 289 | Antiporters gene family | AT1G79900 | 68.896 | 4.07e-145 | 409.0 | |
| Pdy7g01375 | ACH | 38 | 563 | Antiporters gene family | AT5G64290 | 73.954 | 0.0 | 780.0 | |
| Pdy7g01686 | . | 31 | 440 | Antiporters gene family | AT1G55730 | 68.235 | 0.0 | 572.0 | |
| Pdy7g02725 | ACH | 32 | 565 | Antiporters gene family | AT5G17860 | 41.105 | 9.24e-142 | 422.0 | |
| Pdy8g01528 | . | 11 | 545 | Antiporters gene family | AT1G08960 | 64.695 | 0.0 | 654.0 | |
| Pdy8g01863 | ACH | 2 | 776 | Antiporters gene family | AT1G16380 | 39.059 | 0.0 | 557.0 | |
| Pdy8g02338 | . | 51 | 381 | Antiporters gene family | AT3G01550 | 69.254 | 1.35e-156 | 445.0 | |
| Pdy8g02555 | ACH | 1 | 383 | Antiporters gene family | AT5G13490 | 78.59 | 0.0 | 588.0 | |
| Pdy8g02613 | ACH | 63 | 567 | Antiporters gene family | AT5G17860 | 46.863 | 1.10e-163 | 475.0 | |
| Pdy8g02615 | ACH | 1 | 828 | Antiporters gene family | AT3G53720 | 65.824 | 0.0 | 1016.0 | |
| Pdy9g00098 | . | 44 | 591 | Antiporters gene family | AT2G19600 | 81.047 | 0.0 | 860.0 | |
| Pdy9g00100 | . | 217 | 584 | Antiporters gene family | AT2G19600 | 85.054 | 0.0 | 595.0 | |
| Pdy9g00101 | . | 217 | 591 | Antiporters gene family | AT2G19600 | 84.267 | 0.0 | 598.0 | |
| Pdy9g01486 | ACH | 26 | 563 | Antiporters gene family | AT5G64290 | 75.275 | 0.0 | 816.0 | |
| Pdy9g02045 | ACH | 17 | 387 | Antiporters gene family | AT5G54800 | 74.869 | 0.0 | 557.0 | |
| Pdy9g02094 | ACH | 5 | 529 | Antiporters gene family | AT5G55470 | 66.857 | 0.0 | 738.0 | |
| Pdy9g02322 | . | 4 | 543 | Antiporters gene family | AT3G05030 | 74.725 | 0.0 | 832.0 | |
| Pdy9g02400 | . | 11 | 417 | Antiporters gene family | AT5G17630 | 71.253 | 0.0 | 546.0 | |
| Pdy9g02558 | ACH | 30 | 283 | Antiporters gene family | AT1G79900 | 33.216 | 3.62e-42 | 145.0 |