AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pdy4g01061 ATGAACACGAAAAAGCTACGCACACCTGCAGAGCTGGTTCACAAGACTCGATCCCTTCTCCTTTATTCCAAAAACTCTCTCGATGTCGGCTCCCAGATGACAGAACTGAACTCACTACTTAGGGAGTTAAAGTTGATTCTTTATGGCGATGACTACTCCGAGCCTTCAGAGGAAGCTTGTGCACAGTTAACCGAAGAGTTCTTCAGAGAAGATACTTTTCGTCTCCTTATTGTCTTTCTTCCCAAGCTGAATCTGGAGGCCCGTAAAGATGCGACACAAGTTGTTGCCAGTTTGCAGAGGCAACCTTTGCCATCTCGGTTTCAGGTTTCAAGATATTTGGAAGCCAATCTTGATCTCGTAGACATTCTCATATCCGGGTATGATGATCCTCAATTGGCCCTTCATTACGGTAGGATGTTGAAGGAGTGCCTGCGTCATCAAATTGTTGCATCTTACTTATTAGAACCGATTCAGCTTAAGAAACTTGTTGGTTACATACAACATCCAAGTTTTGATATTGCTGCAGATGCTGCAGATGCATTCAAGGATCTTTTGACTAGGCATAAATCTACAGTCGCAGAGAGTTTGTCCAAGAACTACATTTGGTTTTTTACTGAAGTGAATGAAAAGCTACTGAAATCCGCAAGCTATATCACCAGAAGACAAGCTGTAAAGCTTCTGGGATGCATATTGCTTGAGCGTTCAAATTCTAATGTTATGTCGCGCTATGTAAGCTCAAAAGATAACCTAATAATTCTAATGAATCTTTTACGGGACACAAGTAGAAGCATTCAGATTGATGCTTTTCATGTATTCAAGCTTTTTGTAGCAAATGAAAACAAGCCACTTGAGATAGTGAGCATACTTGTTACGAACAGAAGCAAGATTCTACGTTTACTTGGTGCTTTCGTCTATACAGATGATGAAGTGTTTGAGAGAGACAAAAACCATGTGGTGAACGAGCTCGTTGTACTGGAGATTCAAGACTAA 990 41.01 MNTKKLRTPAELVHKTRSLLLYSKNSLDVGSQMTELNSLLRELKLILYGDDYSEPSEEACAQLTEEFFREDTFRLLIVFLPKLNLEARKDATQVVASLQRQPLPSRFQVSRYLEANLDLVDILISGYDDPQLALHYGRMLKECLRHQIVASYLLEPIQLKKLVGYIQHPSFDIAADAADAFKDLLTRHKSTVAESLSKNYIWFFTEVNEKLLKSASYITRRQAVKLLGCILLERSNSNVMSRYVSSKDNLIILMNLLRDTSRSIQIDAFHVFKLFVANENKPLEIVSILVTNRSKILRLLGAFVYTDDEVFERDKNHVVNELVVLEIQD 329
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pdy4g01061 329 Gene3D - 1 325 IPR011989 -
Pdy4g01061 329 PANTHER CALCIUM-BINDING PROTEIN 39-RELATED 4 326 IPR013878 GO:0035556(PANTHER)|GO:0043539(PANTHER)
Pdy4g01061 329 SUPERFAMILY ARM repeat 7 322 IPR016024 -
Pdy4g01061 329 Pfam Mo25-like 4 324 IPR013878 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pdy4g01061 K08272 calcium binding protein 39
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pdy Pdy-Chr4:20235869 Pdy9g01778 Pdy-Chr9:40879524 dispersed
Pdy Pdy-Chr4:20235869 Pdy4g04580 Pdy-Chr4:98611797 transposed