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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g06426 ATGGACATGGTGTTTTGTTCAAAACCCCATTGGTTTCATTCCCAAATACAAGGGTATCAGCAGCAATCAGTTTTTCCTTCCATTCTATATTCCAACAAAACCCTTAATTTTACACGCTCAACATCTTTGTTTGCCGCCAAAAAGACAAGGGTTATATCACATCTTGATTCTAGAGTTAATGGTGCTCTCTCTTCAGACCCTGATTCCACTTTCTTAGACAGGCAAAAAGCACTGGAAGCTGCAATGAATGACATTAACAACTCATTTGGGAAAGGAAGTGTGACAAGACTCGGAAGTCTCGGCGGTGCTCTTGTCGAAACATTCCCAAGTGGTTGTCTCCCCTTAGACCTTGCGTTAGGTGGTGGCTTGCCTAAAGGGAGAATTGTAGAGATTTATGGACCTGAAAGTAGCGGAAAGACTACCTTGGCACTACATGCCATTGCAGAAGTTCAGAAGCTAGGGGGCAATGCAATGCTTGTTGATGCAGAGCATGCGTTTGATCCATCATATTCTAAAGCCCTAGGAGTCGATGTGGAAAATTTGATTGTATGCCAACCAGATAATGGAGAAATGGCACTTGAGATTGCAGACCGAATGTGTAGATCAGGTGCGGTTGATCTCATTTGCATCGACTCTGTCTCTGCTCTTACTCCACGAGCTGAGATTGAAGGGGAGATTGGGATGCAGCAAATGGGATTGCAAGCACGTCTCATGAGTCAAGCATTGCGTAAGATGTCAGGCAATGCATCTAAAGCTGGATGTACTCTTATCTTTCTCAACCAAATAAGATACAAGATAGGAGTTTTTTATGGAAATCCGGAAGTTACAAGTGGAGGTATTGCTTTAAAGTTTTTTGCATCTGTTCGACTTGAAATACGCCCTATTGGGAAGATAAAGTCTGTGAAAGGTGATGAGGACATCGGGCTTAAGGTTCGAGTAAGAGTTCAAAAGAGTAAGGTTTCTAGACCATACAAGCAAGCAGAATTTGAAATTATATTTGGAGAGGGGGCCAGCAAAATGGGATGTATATTGGACTGTGCTGAAATGATGGACATTGTGTTGAAGAAGGGCTCTTGGTATAGCTATCGAGATCAAAGGTTGGGGCAAGGAAGAGATCGCGCGTTGCAGTACTTGAGAGAAAACCTTCCCCTTTGTGATGAAATAGAAAAGATGGTCAGGTCGGCAATGATGGATGAAACTGGACAAGCAGTTACTTCCTACGCTCGACACTCGACACCACTCAATGAAGAGGATGAATTGCTTGAAGAGATTTAA 1275 42.98 MDMVFCSKPHWFHSQIQGYQQQSVFPSILYSNKTLNFTRSTSLFAAKKTRVISHLDSRVNGALSSDPDSTFLDRQKALEAAMNDINNSFGKGSVTRLGSLGGALVETFPSGCLPLDLALGGGLPKGRIVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAVDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVFYGNPEVTSGGIALKFFASVRLEIRPIGKIKSVKGDEDIGLKVRVRVQKSKVSRPYKQAEFEIIFGEGASKMGCILDCAEMMDIVLKKGSWYSYRDQRLGQGRDRALQYLRENLPLCDEIEKMVRSAMMDETGQAVTSYARHSTPLNEEDELLEEI 424
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g06426 424 Hamap Protein RecA [recA]. 74 399 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Pslu1g06426 424 PANTHER RECA 59 405 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Pslu1g06426 424 Gene3D - 103 404 IPR027417 -
Pslu1g06426 424 SUPERFAMILY RecA protein, C-terminal domain 338 395 IPR023400 -
Pslu1g06426 424 CDD RecA 105 339 - -
Pslu1g06426 424 ProSiteProfiles RecA family profile 1. 104 262 IPR020588 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0140664(InterPro)
Pslu1g06426 424 ProSiteProfiles RecA family profile 2. 267 342 IPR020587 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0008094(InterPro)
Pslu1g06426 424 NCBIfam recombinase RecA 73 393 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Pslu1g06426 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 336 IPR027417 -
Pslu1g06426 424 Pfam RecA C-terminal domain 341 396 IPR049261 -
Pslu1g06426 424 FunFam DNA repair protein recA 1 like 103 398 - -
Pslu1g06426 424 ProSitePatterns recA signature. 281 289 IPR020584 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0008094(InterPro)
Pslu1g06426 424 PRINTS RecA protein signature 367 384 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Pslu1g06426 424 PRINTS RecA protein signature 278 306 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Pslu1g06426 424 PRINTS RecA protein signature 161 190 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Pslu1g06426 424 PRINTS RecA protein signature 233 262 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Pslu1g06426 424 PRINTS RecA protein signature 195 224 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Pslu1g06426 424 PRINTS RecA protein signature 313 342 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Pslu1g06426 424 SMART AAA-5 125 296 IPR003593 GO:0016887(InterPro)
Pslu1g06426 424 Pfam recA bacterial DNA recombination protein 76 337 IPR049428 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g06426 K03553 recombination protein RecA
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:44058276 Pslu1g11017 Pslu-Chr1:76287033 dispersed