AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g06466 ATGCTAGAAAGCAGACTGTTTGCGATTATTATAAGGAAGACGAAATCCATCAATCAGATTAGATCTTCGTTTTCGTCGCCCGTCGGATCAACAAATGCTCACAATCGATTTACATTTAGTCGTTATTCAACATATAATAATACTCATTATGCTACTAACCCTAACGCTAGAAGCTGTTTCATCAATTCCTTTCGATCATTTCACAATCTCAATAAGGTCTCCTACAAGCCATTTTATAAGTATATGTCAACTGTAGCGGCAACTGCTTCCAAGGAAAATAAGGAGTCAATGAAGCTTCTTGTTACGGCTGGGCCTCATGCTCAGAAAGCAATTGGAATATGGCTTTTTGCATCTGCTGCATGGGTCTTTAGTATGGTTATTCTTGGTGGTGTCACACGACTCACTCGATCCGGTCTTTCGATGACCGACTGGAAGTTCACTGGCAGCCTTCCTCCTTTAACAGATGAAGATTGGTTGATTGAGTTTGAGAAATATAAACAATCCCCGGAGTTCAAGCGTGTGAACAGAGGAATGAATATTGATGATTTTAAGTTCATCTATTGGATGGAGTATGCACATCGCATGTGGGGAAGGGCTCTGGGAGTCATGTTTGCTCTCCCGTTTTCGTATTTTATTCGAAAAGGATATATTAATCTACGGCTTGGAGTTAGACTCGCTGGTCTATTTGCTCTCGGTGGTGGGCAGGGGATGATTGGTTGGTGGATGGTTAAAAGTGGTTTAGAAGAGCCACCATCAGAGTACTCCCAACCAAGAGTAAGCCCATACCGTCTTGCTGCTCACCTGACTTCAGCTTTTGCAATTTACTGTGGACTCTTCTGGACTGCTCTTTCTGTTGTCATGCCGGAACCTCCAACTGAATCCGTAGCTTGGGTCAAAGGGGCTGCAAAAGTCAAAAGACTTGCTCTTCCGGTTGGCATCCTTGTTGGTATAACTGCAGTATCAGGAGCTTTTGTTGCAGGAAATGATGCGGGTCATGCATTTAATACTTTTCCAAAGATGGGGGATTCATGGATCCCAGAAGATGTTTTGAGTATGAAGCCACTTATCCGGAACTTCTTTGAGAACACGGCAACTGTGCAGCTTGATCATCGTATACTTGCAACACTGACCCTAGCATCAATTAGTGGTCTATGGTGGTCAACAAGAAAACTCGATCTACATCCTGCTATCCGTTCTCTGATCGGAAGCACCGTGGGGATGGCTGCTCTCCAGGTAACCCTGGGCATATCAACTCTTCTATCTTATGTGCCAGTTTCACTTGGCACCGCACACCAAGCTGGGGCCATGACCCTCTTGACTTTTATGCTTCTCCTCAATCACACCTTGCGGCGACCTTCACCAATGCTCCTAAAATCGCTTCCTGCCGTTGCAAAGACTATATAA 1404 44.37 MLESRLFAIIIRKTKSINQIRSSFSSPVGSTNAHNRFTFSRYSTYNNTHYATNPNARSCFINSFRSFHNLNKVSYKPFYKYMSTVAATASKENKESMKLLVTAGPHAQKAIGIWLFASAAWVFSMVILGGVTRLTRSGLSMTDWKFTGSLPPLTDEDWLIEFEKYKQSPEFKRVNRGMNIDDFKFIYWMEYAHRMWGRALGVMFALPFSYFIRKGYINLRLGVRLAGLFALGGGQGMIGWWMVKSGLEEPPSEYSQPRVSPYRLAAHLTSAFAIYCGLFWTALSVVMPEPPTESVAWVKGAAKVKRLALPVGILVGITAVSGAFVAGNDAGHAFNTFPKMGDSWIPEDVLSMKPLIRNFFENTATVQLDHRILATLTLASISGLWWSTRKLDLHPAIRSLIGSTVGMAALQVTLGISTLLSYVPVSLGTAHQAGAMTLLTFMLLLNHTLRRPSPMLLKSLPAVAKTI 467
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g06466 467 Pfam Cytochrome oxidase assembly protein 113 442 IPR003780 GO:0006784(InterPro)|GO:0016020(InterPro)|GO:0016653(InterPro)
Pslu1g06466 467 Hamap Heme A synthase [ctaA]. 108 452 IPR023754 GO:0006784(InterPro)|GO:0016020(InterPro)|GO:0016653(InterPro)
Pslu1g06466 467 PANTHER CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX15 59 465 IPR023754 GO:0005743(PANTHER)|GO:0006784(PANTHER)|GO:0006784(InterPro)|GO:0016020(InterPro)|GO:0016653(InterPro)|GO:0016653(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g06466 K02259 heme a synthase [EC:1.17.99.9]