AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g06469 ATGACGTCCCCTGTAAATCACAATCACAATCACAATCACAGTCACAATCAACAACCGTTTGATGTTCAAACTTTGTTCAACCCTAACAATCCTTACCCTCCACCGTCGCCGTCTTCCGCCGCTTCCTATCCCCCACCCACCGTCATCGCCACCGCCGGCGGAGGTTACTCTTATCAAATCCCCCAAACTGCCCCGAATTTCCACCCTCAATTTCACGTTCAACCACCAAACGAACAGTTTCCTTCTAATTTACAACATCAACGATCACTTCCGTACCCTACAATCCCTCTTCGACCATCTAGCCCGAACAATACAAACCCTAACCCTAACCATGGAGCGCGCCTTATGGCCCTCTTAAGCGCGCCACCGCCTCCCACGTCAGATGTTTTGCCGCAACTATCGAATCCGTTTCCGTCGGTTCCGGTACAGAACCCTAATTTGAACGTTATGGTTCCATCTTCGCCAGGTGTGATGCGACTGCCAAGTAGTAAGTTACCAAAAGGACGGCATTTGATCGGCGATCGTGTTGTTTATGATATTGATGTTAGGTTGCCTGGTGAGATTCAGCCTCAGCTTGAGGTTACTCCCATTACGAAGTATGGTTCGGATCCGAATTTGGTGGTAGGACGGCAGATTGCTGTTAACAGGAGTTATATATGTTATGGCTTGAAACCGGGGACTATCAGAGTTCTCAATATAAATACCGCTCTAAGATCATTGCTTAAAGGTCTTGCTCAGAGGGTTACGGATATGGCTTTTTTTGCTGAGGATGTTCACGTTCTAGCCAGTGCAAGCATGGATGGACGAGTTTACGTATGGAAGATCGCAGAAGGTCCCGATGAGGAGGATAAGGCACAGATCACTGGAAAAATAGTAATTGCTGTTCAAATTGTAGGAGAAGGAGAACCTGTTCATCCTCGAGTTTGTTGGCACTGCCATAAGCAAGAAGTTCTTGTGGTTGGGATTGGGAATCGTATCCTTAAAATTGATACAACAAAGGTTGGGAGAGGTAAAGTTTACTCTGCAGAGGAACCTCTTATATGCTCTGTTGATAAGCTGATTGATGGAATTCAGTTCGTCGGTAAGCATGATGGTGAAGTGACCGATCTATCAATGTGCCAGTGGATGACCACCCGTTTGGTCTCCGCTTCTGTGGATGGAACGATAAAGATCTGGGAAGATCGCAAATCGGTACCTATTGCTGTACTGAGGCCACATGATGGACATCCTGTCAACTCTGTTACATTCTTGACTGCTCCTCATCGTCCAGATCACATCATACTTATCACTGGGGGTCCGTTGAATCGTGAAGTGAAAATATGGGCCTCTGAAAGCGAAGAAGGATGGTTGCTTCCTAGTGATGCTGATTCATGGCATTGTACTCAGACATTGGAGTTGAAGAGTTCTACTGAACCTGTAATTGAAGAAGCATTTTTCAATCAAGTAGTTGCATTATCTCAATCTGGTCTTCTCTTGCTAGCAAATGCGAAGAAGAATGCTATATATGCTGTACACTTGGATTTTGGGCCCAACCCTGAAACAACACGTATGGATTACATTGCAGAGTTCACCGTCACTATGCCAATATTGAGCTTTACTGGCACTAGTGATCTATTACCCAACGGGGACCAGATCGTTCAGGTTTATTGTGTCCAGACACAAGCCATTCAACAATATGCTTTGGACTTGTCCCAGTGTCTGCCACCCCCGATTTATGACGTCTATGAGAAATCCAGCTCAACCGTGTCACGTGATGTAACAGCTATTGAAGGTTTTGCGGGTTCTGAATCGTCTAGTGTTAAATTGGAAACGTCTAGCCCTGATGGTGCACCTATTTTGAGCCTTCCCTTGAGTTCTCCTTTACCCGAGTCTGAAACTAAATCATTCCCGTTGCCAGTTTCTAATGACACTGGTATTTCTTGTGCCGTGTCACCAATGGTTCCATCAAGCCCTAAGTTGTCAGGAAATATTTCCGATCTCTTAAGTCCAACAAGTGGTTTCGAGCCACGTCATCAACTAAATGGTTATGCTGATCAGAAAATTGTGGAATATCCAGTTGACAGGCAATTGGAAACTGCTCATTCTAACTTGTCTAATGCGCCCTCGTTAGATGATGATGCAAACAAAATTTCAAAAGAGAAGTTTAAGCATCCTACTCATCTGGTTACTCCTGCTGAATTGATGGCTACATTATCCTCTGAAGTGAATGGCGTGGGAGTTAAATCTGATACACAAAGTGTTGAGGTGGAGGTTAAGGTTGTGGGTGAAACGGAAATTATTCAAAATGTTGATAATCTCCCGCAAGTTGAAATCAATGGTTCTGCTTATGATGACAAGGAAAAATCCAAATGTTTCTCCTCACAGGTATCTGGTCTTGGACTCGATATGATCAATGGGTCTAAACAAATTGATGAAACCGTAGAAAGCAAGGTAGTGGATCAAACTTCAGATGCTCGAGATGAAGCTGATGATGTAGCAACTGATCTGTCAGGGCCGAGCGAGATGGGTGTACCTGGAATACTTCAATCTGCAGGCCCCTCTTTGAGAGAAAAAAAGAAGAAGAAAAGGAATGCTCAGCATTCTGGTCAATCTTCTTCGAGTGTCCCGAAGTCAACTGATTCTTTTGATGAACTAAGAATGAGTTCAAGTGTTCCCTCATCAGAAGCCATAATTTTACAAATTCAGTCCATGCAAGAAGCACTTGCTCAGGTGTTAATCAATCAAAAGGAAATCTATAAGCAGATTCCGGTGGTGGCTATGGCACCATTTACTAAAGAAGGGAAAAGAATCGAGACATCCATTGGGAAGAGCATGGAGAAAATTCATAAAGCTAATTTGGATACTTATTGGGCTCGTACCCAAGAAGAATCTGCAAAACAAGAAAAGTCAAACAGAGACCGCTATCAGCAAGTTTCAACTTTAGTCTCAAATGGCCACAAGGAATTGCTTGCAGCATCAGAGAAAATACTGAAAAAGGAAATGGCTGCTGTGGTTCCTGCTGTTGGGCGTGCACTTACTCCAATCATTGAGAAAGGAGTCTCTACAGCTGTCTCCGAGGCTTTCCAGAGGGGCATAGGTGATAAGGCTGTGAATCAACTGGAGAAAGCAGTTAATTCCAAGCTCGAAGCTACTGTTTCTAGACAAATTCAAGTTCAATTTCAAAATTCTGGTAAACAAGCTTTACAGGAAGCACTAAGGTCAAGTATGGAGACATTTGTTGTTCCTGCTTTTGAGATATCCTGCAAGACCATGTTTGATCAAGTCGATGCTAAATTTCAGAAGGGAATGGTTGAACATACAATTGCAGCTCAACAGAAAGTTGAGTCCACACATTCACCTTTGGTATTTGCTTTGAGGGATACCATCAATTCAGCATCGTCGATGACTCAAACGTTGAGCGGTGAATTGGCTGATGGTCAAAGGAAATTGATGTCTCTTGCCGCTGTGGGATCAAGTTCTAATGCAACAAATCCATTGATAAGCCAAATAAGCAACGGGCTTACCGCAGGCTTCCATGAAATGATTGAAGCACCGGTGGATCCAACAAAAGAGCTATCTAGGTTGGTATACGAGCATAAATATGAGGAAGCTTTTACTTCTGCCCTGCAAAGAAGTGATGTTCGGATTGTTTCATGGTTATGCTCTCAGGTTGATCTACAAGGGATATTAACAAGTAATCCTCTTCCTTTGAGCCAAGGTGTACTACTATCTTTGTTGCAGCAATTGGCATGTGATATTGGGAACGATATATCTCGGAAACTTGGTTGGATGATGGATGTGGTGGTGGCCATAAAACCGTCTGATGGGATCATTGCAATGCACGTAAAGCCGATATTTGAACAAGTGTACTCGATTCTAAACCATCAAGTGAGTGTCCCCACAGCTTCAGTAGCGGAACTTTCCAGCATACGGGTCGTCATGAGACTCGTAAACGCCACACTAATAAGCTTGTAA 3954 43.7 MTSPVNHNHNHNHSHNQQPFDVQTLFNPNNPYPPPSPSSAASYPPPTVIATAGGGYSYQIPQTAPNFHPQFHVQPPNEQFPSNLQHQRSLPYPTIPLRPSSPNNTNPNPNHGARLMALLSAPPPPTSDVLPQLSNPFPSVPVQNPNLNVMVPSSPGVMRLPSSKLPKGRHLIGDRVVYDIDVRLPGEIQPQLEVTPITKYGSDPNLVVGRQIAVNRSYICYGLKPGTIRVLNINTALRSLLKGLAQRVTDMAFFAEDVHVLASASMDGRVYVWKIAEGPDEEDKAQITGKIVIAVQIVGEGEPVHPRVCWHCHKQEVLVVGIGNRILKIDTTKVGRGKVYSAEEPLICSVDKLIDGIQFVGKHDGEVTDLSMCQWMTTRLVSASVDGTIKIWEDRKSVPIAVLRPHDGHPVNSVTFLTAPHRPDHIILITGGPLNREVKIWASESEEGWLLPSDADSWHCTQTLELKSSTEPVIEEAFFNQVVALSQSGLLLLANAKKNAIYAVHLDFGPNPETTRMDYIAEFTVTMPILSFTGTSDLLPNGDQIVQVYCVQTQAIQQYALDLSQCLPPPIYDVYEKSSSTVSRDVTAIEGFAGSESSSVKLETSSPDGAPILSLPLSSPLPESETKSFPLPVSNDTGISCAVSPMVPSSPKLSGNISDLLSPTSGFEPRHQLNGYADQKIVEYPVDRQLETAHSNLSNAPSLDDDANKISKEKFKHPTHLVTPAELMATLSSEVNGVGVKSDTQSVEVEVKVVGETEIIQNVDNLPQVEINGSAYDDKEKSKCFSSQVSGLGLDMINGSKQIDETVESKVVDQTSDARDEADDVATDLSGPSEMGVPGILQSAGPSLREKKKKKRNAQHSGQSSSSVPKSTDSFDELRMSSSVPSSEAIILQIQSMQEALAQVLINQKEIYKQIPVVAMAPFTKEGKRIETSIGKSMEKIHKANLDTYWARTQEESAKQEKSNRDRYQQVSTLVSNGHKELLAASEKILKKEMAAVVPAVGRALTPIIEKGVSTAVSEAFQRGIGDKAVNQLEKAVNSKLEATVSRQIQVQFQNSGKQALQEALRSSMETFVVPAFEISCKTMFDQVDAKFQKGMVEHTIAAQQKVESTHSPLVFALRDTINSASSMTQTLSGELADGQRKLMSLAAVGSSSNATNPLISQISNGLTAGFHEMIEAPVDPTKELSRLVYEHKYEEAFTSALQRSDVRIVSWLCSQVDLQGILTSNPLPLSQGVLLSLLQQLACDIGNDISRKLGWMMDVVVAIKPSDGIIAMHVKPIFEQVYSILNHQVSVPTASVAELSSIRVVMRLVNATLISL 1317
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g06469 1317 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 283 IPR001680 GO:0005515(InterPro)
Pslu1g06469 1317 ProSiteProfiles Trp-Asp (WD) repeats profile. 360 393 IPR001680 GO:0005515(InterPro)
Pslu1g06469 1317 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 78 1314 IPR045152 GO:0000932(PANTHER)|GO:0031087(PANTHER)|GO:0031087(InterPro)
Pslu1g06469 1317 SMART WD40-4 234 274 IPR001680 GO:0005515(InterPro)
Pslu1g06469 1317 SMART WD40-4 354 393 IPR001680 GO:0005515(InterPro)
Pslu1g06469 1317 SMART WD40-4 396 442 IPR001680 GO:0005515(InterPro)
Pslu1g06469 1317 MobiDBLite consensus disorder prediction 1 46 - -
Pslu1g06469 1317 MobiDBLite consensus disorder prediction 597 617 - -
Pslu1g06469 1317 MobiDBLite consensus disorder prediction 808 880 - -
Pslu1g06469 1317 FunFam Enhancer of mRNA-decapping protein 4 1230 1316 - -
Pslu1g06469 1317 MobiDBLite consensus disorder prediction 860 880 - -
Pslu1g06469 1317 MobiDBLite consensus disorder prediction 808 826 - -
Pslu1g06469 1317 MobiDBLite consensus disorder prediction 1 27 - -
Pslu1g06469 1317 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 194 506 IPR032401 -
Pslu1g06469 1317 SUPERFAMILY WD40 repeat-like 197 509 IPR036322 GO:0005515(InterPro)
Pslu1g06469 1317 Gene3D - 1230 1315 IPR044938 -
Pslu1g06469 1317 Pfam Enhancer of mRNA-decapping protein 4, C-terminal 1187 1292 IPR049404 -
Pslu1g06469 1317 Gene3D - 197 557 IPR015943 GO:0005515(InterPro)
Pslu1g06469 1317 MobiDBLite consensus disorder prediction 28 42 - -
Pslu1g06469 1317 FunFam enhancer of mRNA-decapping protein 4 193 507 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g06469 K12616 enhancer of mRNA-decapping protein 4
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Event-related genes

Select Gene_1 Gene_2 Event_name
134429 Pslu1g06469 Pslu2g00446
134430 Pslu1g06469 Pslu3g15962
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr5:121152463 Pslu1g06469 Pslu-Chr1:44419223 transposed
Pslu Pslu-Chr1:44419223 Pslu2g00446 Pslu-Chr2:2931167 wgd
Pslu Pslu-Chr1:44419223 Pslu3g15962 Pslu-Chr3:114857236 wgd