AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pslu1g06533 | ATGGCACTACTTCACTTGCCTTCCATCCAAGTCTGTTGTTTGGCAGACAAGAAGCATACACATTGTTCATTGAAGTTTGGGGAATCAAATTCAAGAACAACAACTTACAAAAAAGGTTCTTTTCATCAAGAACGCAAACCTCAGAAGGTGAATCTTGAAATTTCACCTCATAGAGCAGTCTCTGCAGTGAGATTAATGCGGATAGAGTTCGGTGGTGCCTTTGCCGACCTTTTAAATGAGAAAGGGAAGGGGTCAGGTGATAACGAGATGGGATATGTTGAAAGAACTCTTGGGTTTTGCACTCGAGATTTGGATGATAGAGATCTCAGAATGGTAACCGACATTGTTGGAGGTACAATTCGTTGGAGAAAATATCTTGACTATTTGATTTTGTCTTTATGCCATGATCCAAACGTGTTTAGTCGTATGGAACCTCTACTATTACAGATTCTTCGGATAGGATTTTATGAGATTGTTAAGCTTGAAGTCCCTTCTTATGCTGTTGTAGATGAGAATGTGCAGCTAGCAAAAGTTGCCCTTAGGCCCGGTGCCGGTAACATGGTCAATGGGATTTTGAGGAAGCTAGTTATGCTTAAGGAAAGTAACTCTCTCCCTTCACCTCAACTGGAAGGTGATGATCGTGCACAAGCACGTGCGCTTGCTACTCTTTATTCTCATCCCGTTTGGATGGTAAGGCGTTGGATAAAATACCTTGGACGTGAAGAAGCTGTTAAGCTGATGATGTGGAATAACAGTGATCCCAGTTTTAGTCTGAGGGCTAATAGAGGAAAAAGTTTTACACGATCAGAGCTTGTGTCACGACTTGAAACATTGAAGGTACCCTATGAGCTCTCTCCTCATCTGGATGATTTTGTTCGTATCAGCACAGGACTGCAGAGTGTTATACAAGATGGGATTCTAAAAGAAGGCTTATGTTCTGTCCAAGATGAAAGTGCAGGTTTGGTGGTCTCCATTGTTGACCCACAACCTGGGGAGACCATAATTGACTGTTGTGCTGCTCCTGGAGGGAAGACGCTCTTCATGGCGGCCTGCTTGAATGGCCAAGGCATGGTAACCGCAATTGACATAAACAAAGGGCGCTTGAGGATCCTCAAAGAGACTGCCAAATTGCAACAACTTCATAACGTCATCACTACCGTTCATGCCGATCTTCGTGAATTTCCTGAGAATAATCACGTGACCTATGATAAAGTGTTACTGGATGCTCCTTGTTCTGGACTTGGTGTTCTTTCCAAGAGAGCAGACTTACGCTGGAATAGGAAGGCAGAAGATATGGAAGAACTTAAAAGTTTGCAAGATGAACTTCTTGATGCAGCTTCCAAGTTGGTAAGACCTGGTGGGGTGCTAGTATACAGCACTTGCTCAATTGATCCTGAGGAAAATGAAGACAGAGTGGCTGCATTTCTTCTCAGGCATCAGGAATACAGCATTGATTCTGCAAAGAGATACACATCGCCTGAATTTTTGACAGAAGAGGGTTATTATTTCTCCAGCCCTGTGAAACATTCTCTTGATGGTGCCTTTGCAGCACGTCTCGTCCGTTGCTCTTGA | 1572 | 43.38 | MALLHLPSIQVCCLADKKHTHCSLKFGESNSRTTTYKKGSFHQERKPQKVNLEISPHRAVSAVRLMRIEFGGAFADLLNEKGKGSGDNEMGYVERTLGFCTRDLDDRDLRMVTDIVGGTIRWRKYLDYLILSLCHDPNVFSRMEPLLLQILRIGFYEIVKLEVPSYAVVDENVQLAKVALRPGAGNMVNGILRKLVMLKESNSLPSPQLEGDDRAQARALATLYSHPVWMVRRWIKYLGREEAVKLMMWNNSDPSFSLRANRGKSFTRSELVSRLETLKVPYELSPHLDDFVRISTGLQSVIQDGILKEGLCSVQDESAGLVVSIVDPQPGETIIDCCAAPGGKTLFMAACLNGQGMVTAIDINKGRLRILKETAKLQQLHNVITTVHADLREFPENNHVTYDKVLLDAPCSGLGVLSKRADLRWNRKAEDMEELKSLQDELLDAASKLVRPGGVLVYSTCSIDPEENEDRVAAFLLRHQEYSIDSAKRYTSPEFLTEEGYYFSSPVKHSLDGAFAARLVRCS | 523 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pslu1g06533 | 523 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 218 | 521 | IPR029063 | - | |
| Pslu1g06533 | 523 | Pfam | 16S rRNA methyltransferase RsmB-F | 325 | 519 | IPR049560 | - | |
| Pslu1g06533 | 523 | CDD | AdoMet-MTases | 333 | 459 | - | - | |
| Pslu1g06533 | 523 | PRINTS | Viridiplantae FMU-related RCMT signature | 63 | 86 | IPR023268 | - | |
| Pslu1g06533 | 523 | PRINTS | Viridiplantae FMU-related RCMT signature | 87 | 103 | IPR023268 | - | |
| Pslu1g06533 | 523 | PRINTS | Viridiplantae FMU-related RCMT signature | 203 | 216 | IPR023268 | - | |
| Pslu1g06533 | 523 | PRINTS | Viridiplantae FMU-related RCMT signature | 480 | 492 | IPR023268 | - | |
| Pslu1g06533 | 523 | Coils | Coil | 428 | 448 | - | - | |
| Pslu1g06533 | 523 | PRINTS | RNA (C5-cytosine) methyltransferase signature | 453 | 469 | IPR023267 | GO:0001510(InterPro)|GO:0008173(InterPro) | |
| Pslu1g06533 | 523 | PRINTS | RNA (C5-cytosine) methyltransferase signature | 306 | 320 | IPR023267 | GO:0001510(InterPro)|GO:0008173(InterPro) | |
| Pslu1g06533 | 523 | PRINTS | RNA (C5-cytosine) methyltransferase signature | 335 | 345 | IPR023267 | GO:0001510(InterPro)|GO:0008173(InterPro) | |
| Pslu1g06533 | 523 | PRINTS | RNA (C5-cytosine) methyltransferase signature | 403 | 415 | IPR023267 | GO:0001510(InterPro)|GO:0008173(InterPro) | |
| Pslu1g06533 | 523 | PRINTS | RNA (C5-cytosine) methyltransferase signature | 504 | 521 | IPR023267 | GO:0001510(InterPro)|GO:0008173(InterPro) | |
| Pslu1g06533 | 523 | ProSiteProfiles | SAM-dependent MTase RsmB-NOP-type domain profile. | 246 | 522 | IPR001678 | GO:0008168(InterPro) | |
| Pslu1g06533 | 523 | FunFam | Ribosomal RNA small subunit methyltransferase B | 318 | 522 | - | - | |
| Pslu1g06533 | 523 | Gene3D | Sun protein; domain 3 | 218 | 319 | - | - | |
| Pslu1g06533 | 523 | Pfam | Methyltr-RsmF-B-like, ferredoxin-like domain | 226 | 296 | IPR054728 | - | |
| Pslu1g06533 | 523 | NCBIfam | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 102 | 520 | IPR004573 | GO:0006364(InterPro)|GO:0008649(InterPro) | |
| Pslu1g06533 | 523 | FunFam | Ribosomal RNA small subunit methyltransferase B | 55 | 205 | - | - | |
| Pslu1g06533 | 523 | Gene3D | Vaccinia Virus protein VP39 | 320 | 523 | IPR029063 | - | |
| Pslu1g06533 | 523 | PANTHER | NOP2 YEAST -RELATED NOL1-NOP2-FMU SUN DOMAIN-CONTAINING | 106 | 521 | IPR023267 | GO:0001510(InterPro)|GO:0008173(InterPro) | |
| Pslu1g06533 | 523 | Pfam | NusB family | 93 | 195 | IPR006027 | GO:0003723(InterPro)|GO:0006355(InterPro) | |
| Pslu1g06533 | 523 | Gene3D | - | 60 | 217 | IPR035926 | - | |
| Pslu1g06533 | 523 | SUPERFAMILY | NusB-like | 93 | 230 | IPR035926 | - | |
| Pslu1g06533 | 523 | FunFam | 16S rRNA (Cytosine(967)-C(5))-methyltransferase RsmB | 213 | 317 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pslu1g06533 | K03500 | 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Pslu | Pslu-Chr1:44818525 | Pslu1g08099 | Pslu-Chr1:55583470 | dispersed |