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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g06543 ATGACGTCATCATCATCATCATCACCCAACGATTCACAGTCGATCATCTACACTTACGGTCTCGAAACAACAACAACAACAGCAATGAACATGCAACATTCCGTTACCGCCGTTGAATCCATATTGAACTACAAGTTCAACGATAACAGTTTATTGGAAGAAGCGCTAACGCATTCTTCGTTTACCGATGGTTCGTGTTACCAACGGCTCGAGTTTTTAGGTGACGCTGTTATCGGTCTTGCTGTATCTAATTTTGTTTACTTGAATTACCCTCACCTTGACCCTGGTCAACTCTCCCTTCTTCGTGCTGCTAATGTTAGTACCGAAAAACTCGCTAGGGTTGCTGTTCATCATGGACTTTACAGGTATGTTCGTCACAATGCCGCCGTCCTCAGTGACAAGGTTGGGGAATTTGTGAATGCGGTTAAGGAAGAAGAAAATACAGTTGTCCACGGTGGACTACTCAAAGCCCCGAAAGTACTTGCGGATATTGTGGAATCAGTGGCTGCTGCTGTTTATGTTGATTGTGGATTTAACTTGCCAATTTTGTGGATGGTAATTAGACAGCTGCTCGAACCTATAGTGATGCTAGATGTACTTGAGAAACAACCACAACCTATTACAATGCTTTTTGAGACGTGTCAGAAAGAAGGGAAGCATCTTGATATAAAGCATCGGAGGAAAGGTGAGAAAAATATAGCAAGTGTGTATGTAGATGGGACGTTTGTTGCTTCTGGCTCTTCAGAGAATAAAGAAAATGCAAAGCTTCATGCAGCTGAGGCAGCTCTGTCTAAGTTTAAAATGTCAAAAACTGATGATGCAGCAACTACGCGTACTTTTTGTGGTTTTAATGAGGTTGCTGATATTGAAGGTGCCAAAAAGAAAGTACACGACCTTTGCGATAAAAAGAATTGGGGGAAGCCCAGTTATAGAGTTGAGCAGGAGTTGGGTCCAGCGCATGATAGAAGATACATATCATCTGTTAAAGTTGAAGTTTCTGAAAAGAGTTTCCTAGTGACAGGAAAAGAGAGGTCTAGAATAAAGGATGCCGAAAATTCTGCAGCCTCAGTGATGTTTTGTGCTCTGCGAGAATCTGGATATGTATGA 1107 42.01 MTSSSSSSPNDSQSIIYTYGLETTTTTAMNMQHSVTAVESILNYKFNDNSLLEEALTHSSFTDGSCYQRLEFLGDAVIGLAVSNFVYLNYPHLDPGQLSLLRAANVSTEKLARVAVHHGLYRYVRHNAAVLSDKVGEFVNAVKEEENTVVHGGLLKAPKVLADIVESVAAAVYVDCGFNLPILWMVIRQLLEPIVMLDVLEKQPQPITMLFETCQKEGKHLDIKHRRKGEKNIASVYVDGTFVASGSSENKENAKLHAAEAALSKFKMSKTDDAATTRTFCGFNEVADIEGAKKKVHDLCDKKNWGKPSYRVEQELGPAHDRRYISSVKVEVSEKSFLVTGKERSRIKDAENSAASVMFCALRESGYV 368
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g06543 368 CDD RIBOc 50 195 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Pslu1g06543 368 PANTHER DICER-RELATED 17 330 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Pslu1g06543 368 Pfam Ribonuclease III domain 68 177 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Pslu1g06543 368 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 291 362 - -
Pslu1g06543 368 ProSitePatterns Ribonuclease III family signature. 68 76 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Pslu1g06543 368 Gene3D - 290 364 - -
Pslu1g06543 368 SMART riboneu5 50 200 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Pslu1g06543 368 SUPERFAMILY RNase III domain-like 32 194 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Pslu1g06543 368 Gene3D Ribonuclease III domain 23 197 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Pslu1g06543 368 SUPERFAMILY dsRNA-binding domain-like 159 268 - -
Pslu1g06543 368 ProSiteProfiles Ribonuclease III family domain profile. 35 177 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Pslu1g06543 368 FunFam Endoribonuclease dicer-like 1 29 198 - -
Pslu1g06543 368 SMART DRBM-3 292 363 IPR014720 -
Pslu1g06543 368 SMART DRBM-3 206 267 IPR014720 -
Pslu1g06543 368 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 205 268 IPR014720 -
Pslu1g06543 368 Gene3D - 201 279 - -
Pslu1g06543 368 Pfam Double-stranded RNA binding motif 206 265 IPR014720 -
Pslu1g06543 368 Hamap Ribonuclease 3 [rnc]. 38 263 IPR011907 GO:0003723(InterPro)|GO:0004525(InterPro)|GO:0006364(InterPro)
Pslu1g06543 368 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 291 364 IPR014720 -
Pslu1g06543 368 SUPERFAMILY dsRNA-binding domain-like 292 366 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g06543 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:44875217 Pslu7g00152 Pslu-Chr7:926607 dispersed
Pslu Pslu-Chr1:44875217 Pslu1g21652 Pslu-Chr1:155443428 transposed