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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g06551 ATGGCAATGTCTTCCTCTATGTTTTCTACACATGCCTCACAAATAGTTTATAAGAAAAATAACATTGTTGGTGATTCCAATAAGTCGGATTATTTGCATAAGCATCTGCTGCATTTCAAGAGGAACAATGTATCAGCTAGCCTTACAACAAACTCGAGTTTGACAGAAAACGGTAACTTAACAAGCAGGTGTAATAATGGAAGTCTATTATCAAAAGATAGAATCCGATGTAGGGCAGTAGAGGTGGAAACTATCCGTACCTTTTTAAAAGGAGAAAATTTTCAACTTCATGATGTGATTGAAGCACAACAATTTGATAGAGATATACTCAGTGCTATATTCGAAGTGGCACGTGAAATGGAAATGATTGAGAAGAAGTCGCGCGGAAGTCAGATTTTGAATGGTTATCTAATGTCCACTCTCTTTTACGAACCTTCAACTAGAACCAGGCTTTCGTTTGAGTCAGCGATGAAGCGGTTAGGCGGGGAGGTTTTGACTACTGAAAATGCACGAGAGTTTTCTTCTGCTGCAAAAGGAGAGACACTTGAAGATACGATTAGAACTGTGGAAGGATATTCGGATATAATTGTTATGAGGCATTTTGAAGGCGGTGCTGCTAAAAGAGCAGCCTTGACAGCTAACATTCCTGTTATTAATGCTGGTGATGGTCCTGGTCAGCATCCTACTCAGGCTCTTCTTGACATGTACACGATCGAAAGAGAGGTAGGAAAGCTGGATGGAATCAAAGTTGGACTTGTTGGTGATCTTGCTAATGGACGAACAGTTCGCTCTCTTGCATATCTACTAGCCAAATATAATGATGTGAAGATCTATTTTGTTTCACCAGAGGTTGTGAAGATGAAGGAGGACATAAAAGAGTACTTAACACTAAAGGGAGTTAAATGGGAAGAAAGTGCAGATTTAAAGGAAGTGGCATCAAAATGTGATGTGGTGTACCAAACGCGCATTCAGAGAGAACGTTTTGGTGAGAGAACTGATATCTATGATGCGGCTCGTGGCAAGTACATTATTGATCGAGACGTATTGGGTGTAATGCAGAAGCATGCTGTTGTTATGCATCCTCTCCCAAGGCTTGATGAGATAACGGTGGATGTAGATGGGGATTCGAGGGCTGCTTATTTTAGACAAGCGAAAAATGGACTCTTCATTAGGATGGCTTTGTTGAAGCTTTTACTTCTTGGTTGGTGA 1209 40.53 MAMSSSMFSTHASQIVYKKNNIVGDSNKSDYLHKHLLHFKRNNVSASLTTNSSLTENGNLTSRCNNGSLLSKDRIRCRAVEVETIRTFLKGENFQLHDVIEAQQFDRDILSAIFEVAREMEMIEKKSRGSQILNGYLMSTLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYSDIIVMRHFEGGAAKRAALTANIPVINAGDGPGQHPTQALLDMYTIEREVGKLDGIKVGLVGDLANGRTVRSLAYLLAKYNDVKIYFVSPEVVKMKEDIKEYLTLKGVKWEESADLKEVASKCDVVYQTRIQRERFGERTDIYDAARGKYIIDRDVLGVMQKHAVVMHPLPRLDEITVDVDGDSRAAYFRQAKNGLFIRMALLKLLLLGW 402
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g06551 402 PRINTS Aspartate carbamoyltransferase signature 132 154 - -
Pslu1g06551 402 PRINTS Aspartate carbamoyltransferase signature 172 181 - -
Pslu1g06551 402 PRINTS Aspartate carbamoyltransferase signature 226 243 - -
Pslu1g06551 402 PRINTS Aspartate carbamoyltransferase signature 380 394 - -
Pslu1g06551 402 PRINTS Aspartate carbamoyltransferase signature 318 327 - -
Pslu1g06551 402 PRINTS Aspartate carbamoyltransferase signature 358 363 - -
Pslu1g06551 402 Pfam Aspartate-ornithine carbamoyltransferase, carbamoyl-P binding domain 98 239 IPR006132 GO:0006520(InterPro)|GO:0016743(InterPro)
Pslu1g06551 402 Gene3D Aspartate-ornithine carbamoyltransferase 227 386 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Pslu1g06551 402 Hamap Aspartate carbamoyltransferase [pyrB]. 96 401 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Pslu1g06551 402 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 142 161 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Pslu1g06551 402 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 227 238 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Pslu1g06551 402 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 354 363 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Pslu1g06551 402 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 364 387 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Pslu1g06551 402 FunFam Aspartate carbamoyltransferase 98 230 - -
Pslu1g06551 402 NCBIfam aspartate carbamoyltransferase 98 399 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Pslu1g06551 402 Pfam Aspartate-ornithine carbamoyltransferase, Asp-Orn binding domain 246 397 IPR006131 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Pslu1g06551 402 SUPERFAMILY Aspartate-ornithine carbamoyltransferase 94 399 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Pslu1g06551 402 ProSitePatterns Aspartate and ornithine carbamoyltransferases signature. 142 149 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Pslu1g06551 402 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 92 399 - -
Pslu1g06551 402 FunFam Aspartate carbamoyltransferase 2 231 386 - -
Pslu1g06551 402 Gene3D Aspartate-ornithine carbamoyltransferase 99 395 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g06551 K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
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Event-related genes

Select Gene_1 Gene_2 Event_name
134448 Pslu1g06551 Pslu2g00555
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:44904279 Pslu2g00555 Pslu-Chr2:3582980 wgd