AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pslu1g06563 | ATGGAGGCGGCGGCGGTGATAATAACAAGTAACACTAGTAGTACTACAAATGGTATGATCAACGACAGTGATAGTCAGGTGGTTCCGGTGACGTTGTTTGTGGCGGTTCTGTGTTTATGTTTGGTTATCGGACACTTGCTCGATGAATATCGCTGGGTTAACGAATCTATCACGGCTATCATCATCGGGTGTGTAGTTGGAACAATTATATTGATAGCTAGCAACTGGAAAAATTCACACTTGCTCAGGTTTAATGAGGAGCTTTTTTTTATTTATTTACTTCCACCCATCATCTTCAACGCTGGATTTCAGGTGAAAAAGAAGCAGTTTTTCCATAACTTTTTGCCCATTATGCTGTTTGGAGTTACTGGTGTTTTCATATCCACATCCATTGTTGCCGCCGGTTGCTGGTGGCTGTTTCCAAAATTGGGCCTTAAGGGTTTGACTATAAGCGAGTATCTTAGTATAGGGACCATTTTCTCATCTACAGATACTGTATGCACATTACAGGTTTTGAATCAAGATGAGACTCCTTTACTATACAGTCTAGTTTTTGGTGAAGGAGTTGTAAACGATGCAACATCTGTTGTTCTGTTCAACGCGGTTCGCAAGATCACTGCTAATACACTTGGTGTCAAGGCTGCTCTTCGTATATTTCTAGATTTTTTGTATTTATTTTCTACAAGCACACTTCTTGGTGTTACAGCTGGCCTTTTGGCATCCTACATTCTTAGAGGCTTGGGTTTTGGCAGGCATTCAAGTGTTCGGGAAATTTCTTTGATGATTCTGATTGCATATTTGTCATACATGTTGGCAGAGTTATTTGAGCTCAGTGGCATTCTGACAGTGTTTTTTTCTGGGGTTTTGATGTCACACTACGCATGGCATAATGTAACCGAAAGCTCAAGAATCACAACAAAACATACCTTTGCAGCCCTGTCTTTTATTGCAGAAACGTTCATATTTTTGTATGTGGGAATGGACGCATTGGATTATGAGAAGTGGAAAATGAGCATATTAAGTTTTTGGACTTCAATGGGCATATACAGCACTGTGATGTTCTTAATTATGCTTGGGCGTGTTGCTTTTGTGTTTCCCCTTTCTGTTATTGCTAATTACATGCATAAAAGTTGTGAGTCCTCATCAAAGATCACAGCAAAACACCAGGTAGTGATATGGTGGGCTGGTCTGATGAGAGGCGCTGTCTCTGTCGCTTTAGCATTCAAACAGTTTACTCTCTCTGGTGTGACGCTTGATCCAATAAATGCCACAATGATCACAACTACTACTGTAATCGTGTTATTTAGTACAATTGTATTTGGTTTCTTGACAAGACCACTTATTAGATATCTTCTTCCTCCTAACACAAGTAACACTAACGGTCCATCTAGAGCTACATCTCTCAAAGAGGATATGACACTTCCATTACTTTCTTTTGAAGAATCGGCTTCTGAAAATCTCTCAAGAGCAAAAGAGAATATATCAATGCTAATGGAAAGGCCTGTTTACACAATCCATTCCTACTGGAGGAGATTCGATGATACTTATATGCGACCTATATTCGGTGGGCCACGTAGCACTGACCTTTCGTAA | 1593 | 40.11 | MEAAAVIITSNTSSTTNGMINDSDSQVVPVTLFVAVLCLCLVIGHLLDEYRWVNESITAIIIGCVVGTIILIASNWKNSHLLRFNEELFFIYLLPPIIFNAGFQVKKKQFFHNFLPIMLFGVTGVFISTSIVAAGCWWLFPKLGLKGLTISEYLSIGTIFSSTDTVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAVRKITANTLGVKAALRIFLDFLYLFSTSTLLGVTAGLLASYILRGLGFGRHSSVREISLMILIAYLSYMLAELFELSGILTVFFSGVLMSHYAWHNVTESSRITTKHTFAALSFIAETFIFLYVGMDALDYEKWKMSILSFWTSMGIYSTVMFLIMLGRVAFVFPLSVIANYMHKSCESSSKITAKHQVVIWWAGLMRGAVSVALAFKQFTLSGVTLDPINATMITTTTVIVLFSTIVFGFLTRPLIRYLLPPNTSNTNGPSRATSLKEDMTLPLLSFEESASENLSRAKENISMLMERPVYTIHSYWRRFDDTYMRPIFGGPRSTDLS | 530 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pslu1g06563 | 530 | PRINTS | Na+-H+ exchanger signature | 157 | 167 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Pslu1g06563 | 530 | PRINTS | Na+-H+ exchanger signature | 102 | 116 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Pslu1g06563 | 530 | PRINTS | Na+-H+ exchanger signature | 117 | 125 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Pslu1g06563 | 530 | PRINTS | Na+-H+ exchanger signature | 88 | 99 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Pslu1g06563 | 530 | PANTHER | SODIUM-HYDROGEN EXCHANGER | 26 | 525 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(InterPro)|GO:0015385(PANTHER)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| Pslu1g06563 | 530 | Pfam | Sodium-hydrogen exchanger family | 41 | 448 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Pslu1g06563 | 530 | NCBIfam | sodium-hydrogen exchanger 3 | 29 | 488 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Pslu1g06563 | 530 | Coils | Coil | 480 | 500 | - | - | |
| Pslu1g06563 | 530 | Gene3D | - | 149 | 201 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pslu1g06563 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 134459 | Pslu1g06563 | Pslu3g16035 | |
| 134460 | Pslu1g06563 | Pslu5g14813 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Pslu | Pslu-Chr1:44991994 | Pslu3g15624 | Pslu-Chr3:112380806 | dispersed | |
| Pslu | Pslu-Chr2:117042810 | Pslu1g06563 | Pslu-Chr1:44991994 | transposed | |
| Pslu | Pslu-Chr5:12251597 | Pslu1g06563 | Pslu-Chr1:44991994 | transposed | |
| Pslu | Pslu-Chr1:44991994 | Pslu3g16035 | Pslu-Chr3:115334115 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Pslu1g02068 | . | 7 | 584 | Antiporters gene family | AT2G19600 | 76.239 | 0.0 | 853.0 | |
| Pslu1g03182 | ACH | 67 | 567 | Antiporters gene family | AT5G17860 | 48.622 | 6.41e-168 | 487.0 | |
| Pslu1g05752 | . | 1 | 384 | Antiporters gene family | AT5G13490 | 74.807 | 0.0 | 568.0 | |
| Pslu1g06563 | ACH | 19 | 525 | Antiporters gene family | AT5G55470 | 70.217 | 0.0 | 744.0 | |
| Pslu1g08856 | . | 6 | 449 | Antiporters gene family | AT3G51860 | 68.08 | 0.0 | 577.0 | |
| Pslu1g09456 | . | 145 | 785 | Antiporters gene family | AT1G06970 | 34.763 | 3.06e-136 | 417.0 | |
| Pslu1g09499 | . | 36 | 844 | Antiporters gene family | AT5G37060 | 43.896 | 0.0 | 685.0 | |
| Pslu1g11248 | . | 58 | 570 | Antiporters gene family | AT5G17860 | 42.058 | 1.13e-139 | 417.0 | |
| Pslu1g17538 | . | 13 | 443 | Antiporters gene family | AT2G38170 | 59.397 | 3.94e-173 | 491.0 | |
| Pslu1g21965 | . | 242 | 331 | Antiporters gene family | AT3G19490 | 40.876 | 2.67e-17 | 77.0 | |
| Pslu1g21970 | . | 48 | 576 | Antiporters gene family | AT3G19490 | 80.447 | 0.0 | 816.0 | |
| Pslu2g00206 | . | 171 | 258 | Antiporters gene family | AT1G79900 | 34.444 | 3.72e-07 | 45.4 | |
| Pslu2g00614 | ACH | 31 | 385 | Antiporters gene family | AT1G61800 | 76.177 | 0.0 | 547.0 | |
| Pslu2g00989 | . | 257 | 382 | Antiporters gene family | AT5G33320 | 67.46 | 4.44e-46 | 162.0 | |
| Pslu2g00990 | . | 137 | 249 | Antiporters gene family | AT5G33320 | 58.537 | 1.20e-36 | 129.0 | |
| Pslu2g01001 | . | 137 | 310 | Antiporters gene family | AT5G33320 | 54.802 | 2.47e-52 | 169.0 | |
| Pslu2g01058 | ACH | 4 | 404 | Antiporters gene family | AT5G33320 | 65.037 | 6.48e-174 | 490.0 | |
| Pslu2g01060 | ACH | 1 | 687 | Antiporters gene family | AT3G62270 | 76.052 | 0.0 | 1087.0 | |
| Pslu2g02089 | ACH | 4 | 656 | Antiporters gene family | AT5G25430 | 66.055 | 0.0 | 923.0 | |
| Pslu2g03443 | ACH | 17 | 775 | Antiporters gene family | AT1G16380 | 36.176 | 4.85e-175 | 521.0 | |
| Pslu2g04809 | . | 93 | 563 | Antiporters gene family | AT5G64290 | 70.064 | 0.0 | 697.0 | |
| Pslu2g05124 | . | 33 | 275 | Antiporters gene family | AT2G01980 | 77.366 | 3.32e-120 | 369.0 | |
| Pslu2g05126 | . | 276 | 1142 | Antiporters gene family | AT2G01980 | 60.499 | 0.0 | 1008.0 | |
| Pslu2g15839 | . | 13 | 543 | Antiporters gene family | AT3G05030 | 72.128 | 0.0 | 804.0 | |
| Pslu2g16037 | . | 10 | 298 | Antiporters gene family | AT5G17400 | 37.075 | 2.19e-58 | 189.0 | |
| Pslu2g16758 | ACH | 30 | 283 | Antiporters gene family | AT1G79900 | 34.629 | 2.36e-44 | 151.0 | |
| Pslu2g17027 | . | 142 | 178 | Antiporters gene family | AT5G33320 | 70.27 | 7.36e-12 | 57.4 | |
| Pslu2g17028 | . | 267 | 337 | Antiporters gene family | AT5G33320 | 63.889 | 6.83e-27 | 102.0 | |
| Pslu2g17132 | ACH | 1 | 795 | Antiporters gene family | AT4G23700 | 65.201 | 0.0 | 1036.0 | |
| Pslu2g17381 | . | 532 | 666 | Antiporters gene family | AT4G23700 | 28.873 | 1.40e-08 | 50.4 | |
| Pslu2g17781 | . | 12 | 810 | Antiporters gene family | AT2G13620 | 72.466 | 0.0 | 1162.0 | |
| Pslu3g00051 | ACH | 31 | 435 | Antiporters gene family | AT1G55730 | 70.574 | 0.0 | 592.0 | |
| Pslu3g00139 | . | 53 | 566 | Antiporters gene family | AT5G17860 | 44.704 | 9.25e-146 | 433.0 | |
| Pslu3g00425 | ACH | 1 | 287 | Antiporters gene family | AT1G79900 | 65.188 | 2.78e-134 | 380.0 | |
| Pslu3g00507 | ACH | 6 | 620 | Antiporters gene family | AT1G15460 | 72.846 | 0.0 | 945.0 | |
| Pslu3g01530 | ACH | 64 | 404 | Antiporters gene family | AT5G33320 | 66.092 | 1.23e-159 | 454.0 | |
| Pslu3g12504 | . | 21 | 566 | Antiporters gene family | AT5G51710 | 76.19 | 0.0 | 851.0 | |
| Pslu3g14724 | ACH | 11 | 795 | Antiporters gene family | AT4G23700 | 65.057 | 0.0 | 1016.0 | |
| Pslu3g14999 | ACH | 30 | 283 | Antiporters gene family | AT1G79900 | 33.798 | 3.54e-41 | 143.0 | |
| Pslu3g15377 | . | 65 | 407 | Antiporters gene family | AT5G17630 | 80.466 | 0.0 | 550.0 | |
| Pslu3g15624 | . | 13 | 543 | Antiporters gene family | AT3G05030 | 75.33 | 0.0 | 833.0 | |
| Pslu3g16035 | ACH | 6 | 529 | Antiporters gene family | AT5G55470 | 69.656 | 0.0 | 748.0 | |
| Pslu3g16111 | ACH | 1 | 385 | Antiporters gene family | AT5G54800 | 72.265 | 0.0 | 555.0 | |
| Pslu3g16392 | ACH | 64 | 436 | Antiporters gene family | AT1G55730 | 60.59 | 2.01e-141 | 436.0 | |
| Pslu3g16874 | ACH | 1 | 563 | Antiporters gene family | AT5G64290 | 75.044 | 0.0 | 827.0 | |
| Pslu3g18004 | . | 400 | 431 | Antiporters gene family | AT2G19600 | 96.875 | 1.29e-13 | 65.1 | |
| Pslu3g18009 | . | 48 | 584 | Antiporters gene family | AT2G19600 | 82.051 | 0.0 | 858.0 | |
| Pslu4g01395 | ACH | 1 | 825 | Antiporters gene family | AT3G53720 | 65.659 | 0.0 | 1021.0 | |
| Pslu4g01396 | ACH | 63 | 567 | Antiporters gene family | AT5G17860 | 48.141 | 1.63e-163 | 474.0 | |
| Pslu4g01512 | ACH | 1 | 384 | Antiporters gene family | AT5G13490 | 76.823 | 0.0 | 563.0 | |
| Pslu4g01514 | . | 1 | 384 | Antiporters gene family | AT5G13490 | 76.302 | 0.0 | 561.0 | |
| Pslu4g01515 | . | 1 | 384 | Antiporters gene family | AT5G13490 | 76.302 | 0.0 | 561.0 | |
| Pslu4g01824 | . | 77 | 381 | Antiporters gene family | AT3G01550 | 60.458 | 2.54e-116 | 341.0 | |
| Pslu4g01825 | . | 56 | 381 | Antiporters gene family | AT3G01550 | 70.948 | 2.57e-158 | 449.0 | |
| Pslu4g02551 | ACH | 15 | 776 | Antiporters gene family | AT1G16380 | 38.939 | 0.0 | 552.0 | |
| Pslu4g03051 | . | 4 | 545 | Antiporters gene family | AT1G08960 | 61.593 | 0.0 | 627.0 | |
| Pslu4g03334 | . | 81 | 405 | Antiporters gene family | AT5G46110 | 77.381 | 0.0 | 541.0 | |
| Pslu4g05885 | . | 1 | 384 | Antiporters gene family | AT5G13490 | 79.427 | 0.0 | 602.0 | |
| Pslu5g00300 | . | 13 | 427 | Antiporters gene family | AT3G05030 | 29.571 | 1.13e-34 | 133.0 | |
| Pslu5g01174 | . | 1 | 682 | Antiporters gene family | AT3G62270 | 79.826 | 0.0 | 1133.0 | |
| Pslu5g01813 | ACH | 11 | 534 | Antiporters gene family | AT3G05030 | 62.524 | 0.0 | 670.0 | |
| Pslu5g14805 | ACH | 92 | 563 | Antiporters gene family | AT5G64290 | 80.085 | 0.0 | 781.0 | |
| Pslu5g15204 | ACH | 47 | 436 | Antiporters gene family | AT1G55730 | 73.096 | 0.0 | 577.0 | |
| Pslu5g16618 | . | 43 | 560 | Antiporters gene family | AT5G17860 | 41.651 | 2.54e-136 | 407.0 | |
| Pslu6g14384 | . | 6 | 302 | Antiporters gene family | AT5G17400 | 75.421 | 9.44e-168 | 466.0 | |
| Pslu6g14871 | ACH | 1 | 682 | Antiporters gene family | AT3G62270 | 76.266 | 0.0 | 1083.0 | |
| Pslu6g15691 | ACH | 10 | 675 | Antiporters gene family | AT1G15460 | 71.025 | 0.0 | 993.0 | |
| Pslu6g15756 | ACH | 1 | 296 | Antiporters gene family | AT1G79900 | 69.608 | 6.26e-147 | 413.0 | |
| Pslu6g16247 | ACH | 31 | 435 | Antiporters gene family | AT3G13320 | 71.429 | 0.0 | 590.0 | |
| Pslu7g00156 | ACH | 9 | 662 | Antiporters gene family | AT5G25430 | 63.982 | 0.0 | 885.0 | |
| Pslu7g01451 | ACH | 1 | 818 | Antiporters gene family | AT3G53720 | 59.783 | 0.0 | 870.0 | |
| Pslu7g01452 | . | 61 | 822 | Antiporters gene family | AT3G53720 | 57.532 | 0.0 | 770.0 | |
| Pslu7g03017 | . | 1 | 557 | Antiporters gene family | AT5G12860 | 82.028 | 0.0 | 894.0 | |
| Pslu7g03048 | . | 1 | 385 | Antiporters gene family | AT5G13490 | 75.844 | 0.0 | 564.0 | |
| Pslu7g03049 | . | 41 | 239 | Antiporters gene family | AT5G13490 | 49.246 | 7.39e-48 | 158.0 | |
| Pslu7g03055 | . | 278 | 363 | Antiporters gene family | AT3G08580 | 64.368 | 1.76e-29 | 106.0 | |
| Pslu7g08044 | . | 55 | 801 | Antiporters gene family | AT3G52080 | 44.652 | 0.0 | 666.0 | |
| Pslu7g10235 | . | 1 | 405 | Antiporters gene family | AT5G46110 | 80.147 | 0.0 | 631.0 | |
| Pslu7g10295 | . | 30 | 283 | Antiporters gene family | AT1G79900 | 28.671 | 3.16e-33 | 122.0 | |
| Pslu7g10977 | . | 6 | 448 | Antiporters gene family | AT3G51860 | 62.528 | 2.03e-175 | 498.0 | |
| Pslu7g11352 | . | 23 | 539 | Antiporters gene family | AT2G47600 | 68.391 | 0.0 | 719.0 | |
| Pslu7g11419 | ACH | 12 | 534 | Antiporters gene family | AT3G05030 | 63.359 | 0.0 | 671.0 | |
| Pslu7g11852 | . | 168 | 404 | Antiporters gene family | AT5G46110 | 50.633 | 4.14e-79 | 241.0 | |
| Pslu7g11859 | . | 106 | 408 | Antiporters gene family | AT5G46110 | 50.825 | 5.86e-107 | 319.0 |