AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g06572 ATGTTATGCCTTTCAACGCTCGGCAAAAATGTCATCAATACCAAAAAGCTTCGGACTCCTGTAGAGGTCGTTCAAAAGACTCGATCTCTTCTCCTTTATTCCAACAACTCCTTCAATGTTGGCTCCCAGACAACAGAGTTGAACTTGATAATTAAGGAACTGAAGTTGATTCTTTATGGTGATGATGACTGTGAACCTTCTGAAGAAGCTTGTGTGCAGTTGACTGATGAGTTCTTTAAAGAAGACACATTGCGTTTGCTTGTTATCTTTCTTCCCAAGTTGAATTTGGAGGCCCGAAAAGATGCCACTCAAGTTGTTGCCAGTTTGCAAAGGCAACCATTGCCGTCACGCTTCCAGGCTTCTAGATATTTGGAAACTAATCTAGACCTTGTAGACATTCTAATATCAGGATACGAAGATCCTCAACTAGCTCTTCATTATGGTAGGATGTTAAAGGAGTGCCTACGTCATCAAATTGTTGCAAGTTACTTATTAGAATCAAGTCAACTGAAGAAACTTATTGGTTACATTCAGCATCCGAGTTTTGATATTGCTGCTGATGCTGCAGATGTGTTTAAGGATCTTTTGACTAGGCATAAGTCAACTGTTTCCGGATCTTTGTCCAAAAACTATTGTTGGTTTTTTACTGAATTTAACGAAAAGCTGATGAAATCTACAAACTATATCACCAGAAGACAAGCTGTCAAGCTATTGGGATGCATATTGCTTGAGCGTTCGAATTCTTATGTTATGACGCGTTATGTAAGCTCAAAAGAGAACCTAATGGTTCTTATGAATCTTCTAAGGGATACAAGTAGGAACATCCAGATAGATGCTTTTCATGTTTTCAAGCTCTTTGTAGCAAATGAGAATAAGTCTCCTGAGATAGTGGGCATACTTGTTACAAACAGAAGCAAGCTTATACGTTTACTGGGTGCCTTCATGCAAACAGATGATGAAGTGTTTGAGATGGACAAAGTTCAGGTGGTTAATGAACTCGCACTACTGGAGCTTCAAGAGTGA 1023 39.2 MLCLSTLGKNVINTKKLRTPVEVVQKTRSLLLYSNNSFNVGSQTTELNLIIKELKLILYGDDDCEPSEEACVQLTDEFFKEDTLRLLVIFLPKLNLEARKDATQVVASLQRQPLPSRFQASRYLETNLDLVDILISGYEDPQLALHYGRMLKECLRHQIVASYLLESSQLKKLIGYIQHPSFDIAADAADVFKDLLTRHKSTVSGSLSKNYCWFFTEFNEKLMKSTNYITRRQAVKLLGCILLERSNSYVMTRYVSSKENLMVLMNLLRDTSRNIQIDAFHVFKLFVANENKSPEIVGILVTNRSKLIRLLGAFMQTDDEVFEMDKVQVVNELALLELQE 340
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g06572 340 PANTHER CALCIUM-BINDING PROTEIN 39-RELATED 14 337 IPR013878 GO:0035556(PANTHER)|GO:0043539(PANTHER)
Pslu1g06572 340 SUPERFAMILY ARM repeat 20 334 IPR016024 -
Pslu1g06572 340 Gene3D - 16 337 IPR011989 -
Pslu1g06572 340 Pfam Mo25-like 15 336 IPR013878 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g06572 K08272 calcium binding protein 39
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:45088027 Pslu4g08279 Pslu-Chr4:57402958 dispersed
Pslu Pslu-Chr1:45088027 Pslu5g15261 Pslu-Chr5:111561102 wgd