AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g06593 ATGGATGTAGTTGCAGGTGAAGCCTTTTTAGTTTGGAACAATTCTTCTCCATATTCTTCATCATTATATAAAACAAGAATCCCAAAACCATCTATTTTCAGATTATCAACAGCAACAAGAATAAGAAGGTGCAACCCTAAAATCTTACATTGTAGGAGTAATTGTACAACTTATGCTGCTGCTGTTACTAGATTCAGCAACCATAGGATAAGCATTCTTGATTCAAGAAATACTTTGAGGTCTGTTTTGGTTAAAAGTAGCAACCACCATTCAACAAATCCCAACCCAAATGTTGTGGATTTTGTTAAAAAAGGTTTGATTTTGGCTGCAGCATGTTGTGTCTTGGGATGCTGCAGAGCTGCTCATGGGGTTGAATATTCTGTGGGTTTAGAGCAGATTAAGTTGTCTGTTCATAATTCTTTACCCAAAGTTTTGATGGTGCTTAAAGTTTTGAAGGAACAAGGTTTAATCTTAGCTGCCCTTTTTGGTCTTTCTGCATTTTTCTCCATGGCTGAAACTTCAATTACCACTCTTTGGCCTTGGAAGGTTCGAGAATTGGCTGACAAAGAGTCTGAAAACGGTGTGTTCAAAATGCTTCGTAATGACGTTACTCGGTTCTTGACAACCATTCTTATTGGCACGACTGTTGTCAATATCGGAGCAACAGCACTGGTCACTGAAGCAGCAACTACAATCTTTGGCGAAGCAGGTGTCAGTGCAGCCACTGGAGTAATGACGGTTGCTGTTTTGCTACTCACGGAAATAACTCCAAAAAGTATAGCTGTTCACAATGCCACTGAGGTTGCAAGATTTGTGGTCAGGCCGATTGCATGGCTTTCTTTAGTTCTATATCCTGTTGGAAGAGTCGTAACATATCTCTCAATGGGAATGCTCAAGTTGCTTGGTCTGAAAGGAAGAAGTGAGCCATATGTGACTGAGGATGAGTTGAAGTTGATGTTGCGAGGGGCTGAACTAAGTGGGGCCATAGAAGAGGAAGAACAGGATATGATTGAAAATGTTTTGGAAATTAAAGACACATATGTTCGAGAGGTTATGACACCTTTGGTTGATGTTGTTGCTAGTGATTCTAGTGCAACACTTGTTGATTTCCACGCCTTGTGGGTGACTCATCAGTATTCAAGGGTACCGGTGTTTGAGCAACGTGTTGATAATATAGTCGGTATTGCATATGCAATGGATCTATTAGATTATGTTCAGAAGGGAGACCTATTAGAAACTACCACTGTGGGGGATATGGCTCATAAACCTGCTTATTTTGTGCCTGATTCAATGTCAGTGTGGAATCTTCTTAGAGAGTTTCGCATCAGGAAGGTACACATGGCAGTTGTCTTAAACGAATATGGTGGGACAGTTGGAATTGTAACACTGGAAGATGTTGTTGAAGAAATTGTTGGTGAAATTTTCGATGAAAATGATTCAAAAGAGGAAATAGAAAAAAAGACTGGATATATTGTAATGCGGGCTGAAGGAATCTATGATGTAGATGCAAATACATCCATTGACCAGCTTTCTGAAGATCTTAACATAAAGATGCCAGAGGGCCATCAATATGAAACGGTGTCAGGGTTTGTGTGTGAGGCATTTGGATACATTCCAAAGACAGGTGAAAGTATAAAAGTGGTACTTGAGAAGGAACAGGATCATGATGAGTATACAGAGGACGATGGCGATCGTCAAAATCAAAAAGAAAAAGAAAAGAACCAAATATTTCAAATAGAGATATTAGCAGGAAATGCAAGAAAGGTTGGTGCAGTTAGGTTTGAAAGTGTAACACATGAGGAGCTGGAGGAGGAGGAGGAGGAAACAACAAAAGATGTGAAGAAGCTGGTTCCAAAAATTATGAAAAGGAGATGGGGAGGTGATGATGATAATGAAACAAGTAGGAAGATTGAGTATGAGAAGAATGATGTAATCCCACAACTTGAAATCAAACAGGGAGAATAA 1965 39.59 MDVVAGEAFLVWNNSSPYSSSLYKTRIPKPSIFRLSTATRIRRCNPKILHCRSNCTTYAAAVTRFSNHRISILDSRNTLRSVLVKSSNHHSTNPNPNVVDFVKKGLILAAACCVLGCCRAAHGVEYSVGLEQIKLSVHNSLPKVLMVLKVLKEQGLILAALFGLSAFFSMAETSITTLWPWKVRELADKESENGVFKMLRNDVTRFLTTILIGTTVVNIGATALVTEAATTIFGEAGVSAATGVMTVAVLLLTEITPKSIAVHNATEVARFVVRPIAWLSLVLYPVGRVVTYLSMGMLKLLGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTYVREVMTPLVDVVASDSSATLVDFHALWVTHQYSRVPVFEQRVDNIVGIAYAMDLLDYVQKGDLLETTTVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIEKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPKTGESIKVVLEKEQDHDEYTEDDGDRQNQKEKEKNQIFQIEILAGNARKVGAVRFESVTHEELEEEEEETTKDVKKLVPKIMKRRWGGDDDNETSRKIEYEKNDVIPQLEIKQGE 654
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g06593 654 Gene3D - 489 583 IPR016169 -
Pslu1g06593 654 PANTHER HEMOLYSIN-RELATED 131 611 - -
Pslu1g06593 654 MobiDBLite consensus disorder prediction 552 572 - -
Pslu1g06593 654 Pfam CBS domain 416 471 IPR000644 -
Pslu1g06593 654 Pfam CBS domain 348 406 IPR000644 -
Pslu1g06593 654 Pfam Transporter associated domain 494 595 IPR005170 -
Pslu1g06593 654 ProSiteProfiles CBS domain profile. 419 477 IPR000644 -
Pslu1g06593 654 ProSiteProfiles CNNM transmembrane domain profile. 147 333 IPR002550 -
Pslu1g06593 654 ProSiteProfiles CBS domain profile. 352 413 IPR000644 -
Pslu1g06593 654 SUPERFAMILY CBS-domain pair 335 474 IPR046342 -
Pslu1g06593 654 CDD CBS-pair-CorC-HlyC-assoc 348 468 IPR044751 -
Pslu1g06593 654 FunFam Magnesium-cobalt efflux protein CorC 329 479 - -
Pslu1g06593 654 SMART CorC-HlyC-2 492 598 IPR005170 -
Pslu1g06593 654 SUPERFAMILY FAD-binding-transporter-associated domain-like 490 598 IPR036318 GO:0050660(InterPro)
Pslu1g06593 654 Gene3D - 327 482 IPR046342 -
Pslu1g06593 654 Pfam Cyclin M transmembrane N-terminal domain 156 333 IPR002550 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g06593 K03699 magnesium and cobalt exporter, CNNM family
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:45151388 Pslu1g21522 Pslu-Chr1:154519137 dispersed