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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g20744 ATGAATAGTAATCCAGCAACGCCGATGAACGCAAACGCGCCGTCGTCTAGCTCCGGTGGCGCCGGATCACCTGATGTATCTACTCCAAGAAGAAATTCAAAACGACCTAAGTATTCTAGGTTTACACAACAGGAACTGCCAGCGTGCAAGCCAATTCTTACTCCAAAATGGGTTATTTCAGCGTTCATGCTTGTGACCATTGTCTTCATCCCAATAGGACTTGCTTCACTCTTTGCGTCTCGTGATGTAGTTGAAATCATTGACCGGTATGATAATGCCTGCATAGAAGGCTCAAAAAGTCAAAAGGTCGAATTCATACAATCCAATAGAAATAAAACCTGCGTGAGAAGCTTGACAGTCAGAAAGCGTATGAAGCAGCCTATCTATGTTTATTATCAGCTAGACAATTTTTATCAGAATCACCGCAGGTATGTCAAGAGCCGAAGTGATACGCAATTGAGGAATCGTGGTGATGAGAATGACACAAGTACCTGTAAGCCAGAGCATGATGCAAATGGAATGCCGATAGTGCCTTGTGGTCTTGTAGCCTGGAGTTTGTTCAATGACACATATAGCTTCTCCACCAGTAACAACCGCCCATTGAATGTAAACAAGAGGCATATTTCATGGAAGAGTGACCGAGAAGACAAGTTTGGCAGTGATGTCTTTCCAAAAAATTTCCAAAATGGAAGTCTTATTGGCGGTGGACGTCTCAATGAGTCTAAACCACTGAGTGAGCAGGAAGACCTTATTGTGTGGATGCGAACTGCAGCTCTGCCAACTTTTAGGAAGTTGTATGGGAAGATAGAGGTGGATATCGAGGCAGGCGAGACAATAAATGTGGTATTGGAGAACAACTACAACACTTACAGTTTCAGTGGCAAGAAGAAACTTGTGCTCTCAACCACCAGCTGGCTTGGTGGAAAAAATAATTTTATCGGCATTGCATATCTTGCTGTTGGTGGATTGTGCTTCTTACTAGCTACAACTTTTACTCTCATATATCTCATTAAGCCAAGGCATCTTGGAGATCCTACTTATTTGTCATGGAACAGAAACCCTGGTGGTCACTGA 1074 43.11 MNSNPATPMNANAPSSSSGGAGSPDVSTPRRNSKRPKYSRFTQQELPACKPILTPKWVISAFMLVTIVFIPIGLASLFASRDVVEIIDRYDNACIEGSKSQKVEFIQSNRNKTCVRSLTVRKRMKQPIYVYYQLDNFYQNHRRYVKSRSDTQLRNRGDENDTSTCKPEHDANGMPIVPCGLVAWSLFNDTYSFSTSNNRPLNVNKRHISWKSDREDKFGSDVFPKNFQNGSLIGGGRLNESKPLSEQEDLIVWMRTAALPTFRKLYGKIEVDIEAGETINVVLENNYNTYSFSGKKKLVLSTTSWLGGKNNFIGIAYLAVGGLCFLLATTFTLIYLIKPRHLGDPTYLSWNRNPGGH 357
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g20744 357 MobiDBLite consensus disorder prediction 148 169 - -
Pslu1g20744 357 Pfam LEM3 (ligand-effect modulator 3) family - CDC50 family 77 340 IPR005045 GO:0016020(InterPro)
Pslu1g20744 357 PANTHER CELL CYCLE CONTROL PROTEIN 50 29 349 IPR005045 GO:0005783(PANTHER)|GO:0005794(PANTHER)|GO:0005886(PANTHER)|GO:0016020(InterPro)
Pslu1g20744 357 MobiDBLite consensus disorder prediction 1 29 - -
Pslu1g20744 357 PIRSF Lem3-Cdc50 7 353 IPR005045 GO:0016020(InterPro)
Pslu1g20744 357 MobiDBLite consensus disorder prediction 1 40 - -
Pslu1g20744 357 MobiDBLite consensus disorder prediction 148 166 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g20744 K26935 cell cycle control protein 50
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Event-related genes

Select Gene_1 Gene_2 Event_name
134840 Pslu1g20744 Pslu3g15885
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr2:25020668 Pslu1g20744 Pslu-Chr1:149612868 transposed
Pslu Pslu-Chr2:123163015 Pslu1g20744 Pslu-Chr1:149612868 transposed
Pslu Pslu-Chr5:100238533 Pslu1g20744 Pslu-Chr1:149612868 transposed
Pslu Pslu-Chr7:49306297 Pslu1g20744 Pslu-Chr1:149612868 transposed
Pslu Pslu-Chr1:149612868 Pslu3g15885 Pslu-Chr3:114321728 wgd