AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pslu1g20746 | ATGAGCATGAAAACGCCAAGTGTTGTTGCTCGGCTCAGGAATTCGGGGTTATTACGAACCCAAGGTCTTATTGGTGGGAAATGGCTCGATGCATATGATGGGAAGACTATTGAGGTAAAGAATCCTGCTGATGGTGAAGTTATAGCTTCTGTTCCATGTATGGGTGATAGGGAAACTAAAGATGCGATTTCTGCAGCCTATGATGCTTTTAGCCCTTGGAGCAAACTTACTGCAGCTGAGAGGGGTAGTCGCCTACGATATTGGTATAACTTGCTGATTGCAAATAAAGAAGAGCTCGGACAACTAATAACTTTGGAGCAAGGAAAACCTCTAAAGGAATCCATTGTGGAGGTCAGATATGGGGCTGGTTTCGTTGAGTTCTTCGCAGAGGAGGCAAAACGATGTTATGGAGATATAATTCCAGCACCACTGCCTGATCGTCGTCTATTTGTACTAAAGCAGCCTGTTGGTGTGGTTGGTGCAATCACTCCGTGGAATTTTCCCTTGGCAATGATTACTAGGAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACTGTGGTCATAAAGCCATCTGAGCTCACACCGTTGACTGCCTTAGCAGCAGCTGAGCTGGCCCTTCAATCCGGAATCCCTCCAGGTGTGTTGAATGTGGTGATGGGAGATGCTCCTAGTATTGGAAATTCTTTACTTGAGAGCACACAAGTAAGGAAGATAACATTTACAGGTTCTACAGCTGTTGGAAAGAAATTAATGGCTGGTGCAGCTCAGACTGTCAAAAAGGTATCTCTTGAACTTGGTGGTAACGCACCTTGCATAATCTTCGATGATGCTGATCTGGAAGCTGCAGTGAAGGGGAGTTTGTCAACGAAATTCAATAACACTGGGCAACAATGTGTGTGCACAAATAGAGTACTGGTGCAAGAAGGCATATATGAGAAGTTCATAGATGCCTTCTCAAATGCTGTTCAGAACCTTAAAGTTGGCAATGGTTTCAGTGAAGGTGTGACCCAGGGACCACTTATTAATGAAGCTGCTGTACAAAAGGTTGATTCATTTGTGCAAGATGCTATCTCAAAGGGAGCAAAAGTTCTTCTTGGTGGTAAGAGGCATAGCCTAGGCATGACTTTTTACGAGCCCACCATTTTAAGTGATGTCAATAATGAGATGCTCATAGCAAGGCAGGAAGTATTTGGACCTGTTGCACCTATTATACGGTTTAAAACAGAAGAAGAAGCTATACAGATTGCAAATGACACTAATTCAGGATTAGCTGCTTACATATTCACAAACAGTATTCAGCGCTCATGGCGTGTATCTGAAGCTCTTGAATATGGTATGGTAGGAGTTAACGAGGGATCAATTTCTACAGCGGTGGCTCCATTTGGAGGTTTTAAAGAGTCTGGTCTAGGAAGGGAAGGTTCTAAATATGGATCAGATGATTATCAAGAAACGAAGTACGTTTGTATGGGAAACATGGGGTAA | 1482 | 43.59 | MSMKTPSVVARLRNSGLLRTQGLIGGKWLDAYDGKTIEVKNPADGEVIASVPCMGDRETKDAISAAYDAFSPWSKLTAAERGSRLRYWYNLLIANKEELGQLITLEQGKPLKESIVEVRYGAGFVEFFAEEAKRCYGDIIPAPLPDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELALQSGIPPGVLNVVMGDAPSIGNSLLESTQVRKITFTGSTAVGKKLMAGAAQTVKKVSLELGGNAPCIIFDDADLEAAVKGSLSTKFNNTGQQCVCTNRVLVQEGIYEKFIDAFSNAVQNLKVGNGFSEGVTQGPLINEAAVQKVDSFVQDAISKGAKVLLGGKRHSLGMTFYEPTILSDVNNEMLIARQEVFGPVAPIIRFKTEEEAIQIANDTNSGLAAYIFTNSIQRSWRVSEALEYGMVGVNEGSISTAVAPFGGFKESGLGREGSKYGSDDYQETKYVCMGNMG | 493 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pslu1g20746 | 493 | FunFam | Succinate-semialdehyde dehydrogenase I | 267 | 456 | - | - | |
| Pslu1g20746 | 493 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 267 | 456 | IPR016163 | GO:0016620(InterPro) | |
| Pslu1g20746 | 493 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 34 | 481 | IPR016162 | GO:0016491(InterPro) | |
| Pslu1g20746 | 493 | PANTHER | SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL | 12 | 492 | IPR050740 | GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER) | |
| Pslu1g20746 | 493 | CDD | ALDH-F5-SSADH-GabD | 39 | 489 | - | - | |
| Pslu1g20746 | 493 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 263 | 270 | IPR029510 | GO:0016491(InterPro) | |
| Pslu1g20746 | 493 | Pfam | Aldehyde dehydrogenase family | 28 | 487 | IPR015590 | GO:0016491(InterPro) | |
| Pslu1g20746 | 493 | SUPERFAMILY | ALDH-like | 14 | 491 | IPR016161 | GO:0016491(InterPro) | |
| Pslu1g20746 | 493 | FunFam | Succinate-semialdehyde dehydrogenase I | 34 | 278 | - | - | |
| Pslu1g20746 | 493 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 291 | 302 | IPR016160 | GO:0016491(InterPro) | |
| Pslu1g20746 | 493 | NCBIfam | succinate-semialdehyde dehydrogenase | 39 | 485 | IPR010102 | GO:0009013(InterPro)|GO:0009450(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pslu1g20746 | K17761 | succinate-semialdehyde dehydrogenase, mitochondrial [EC:1.2.1.24] | ||||
| Pslu1g20746 | K00135 | succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Pslu | Pslu-Chr1:149644416 | Pslu5g16507 | Pslu-Chr5:119516244 | dispersed | |
| Pslu | Pslu-Chr1:149634523 | Pslu1g20746 | Pslu-Chr1:149644416 | tandem |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Pslu1g02621 | . | 1 | 545 | Aldehyde Dehydrogenase gene family | AT3G66658 | 80.734 | 0.0 | 925.0 | |
| Pslu1g03832 | ACH | 4 | 483 | Aldehyde Dehydrogenase gene family | AT4G36250 | 54.375 | 0.0 | 571.0 | |
| Pslu1g03835 | . | 4 | 484 | Aldehyde Dehydrogenase gene family | AT4G36250 | 54.054 | 0.0 | 571.0 | |
| Pslu1g05020 | . | 284 | 349 | Aldehyde Dehydrogenase gene family | AT3G66658 | 65.152 | 2.24e-22 | 90.9 | |
| Pslu1g08180 | ACH | 2 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 68.4 | 0.0 | 721.0 | |
| Pslu1g11221 | . | 315 | 361 | Aldehyde Dehydrogenase gene family | AT3G66658 | 59.574 | 3.65e-08 | 53.9 | |
| Pslu1g20745 | . | 34 | 525 | Aldehyde Dehydrogenase gene family | AT1G79440 | 77.439 | 0.0 | 791.0 | |
| Pslu1g20746 | . | 34 | 525 | Aldehyde Dehydrogenase gene family | AT1G79440 | 76.423 | 0.0 | 773.0 | |
| Pslu1g22131 | . | 75 | 316 | Aldehyde Dehydrogenase gene family | AT2G14170 | 79.752 | 5.70e-138 | 400.0 | |
| Pslu1g22133 | ACH | 315 | 606 | Aldehyde Dehydrogenase gene family | AT2G14170 | 84.354 | 5.07e-179 | 507.0 | |
| Pslu2g01715 | . | 6 | 484 | Aldehyde Dehydrogenase gene family | AT1G44170 | 66.388 | 0.0 | 679.0 | |
| Pslu3g10810 | . | 309 | 349 | Aldehyde Dehydrogenase gene family | AT3G48170 | 64.286 | 4.47e-06 | 42.4 | |
| Pslu3g15065 | ACH | 1 | 496 | Aldehyde Dehydrogenase gene family | AT2G24270 | 85.081 | 0.0 | 897.0 | |
| Pslu3g17634 | . | 1 | 496 | Aldehyde Dehydrogenase gene family | AT2G24270 | 89.315 | 0.0 | 935.0 | |
| Pslu4g01526 | ACH | 1 | 483 | Aldehyde Dehydrogenase gene family | AT4G36250 | 55.694 | 0.0 | 576.0 | |
| Pslu4g01857 | . | 1 | 538 | Aldehyde Dehydrogenase gene family | AT3G48000 | 75.185 | 0.0 | 867.0 | |
| Pslu5g11949 | . | 19 | 556 | Aldehyde Dehydrogenase gene family | AT5G62530 | 80.669 | 0.0 | 934.0 | |
| Pslu5g14838 | ACH | 84 | 607 | Aldehyde Dehydrogenase gene family | AT2G14170 | 67.871 | 0.0 | 744.0 | |
| Pslu5g15268 | . | 180 | 298 | Aldehyde Dehydrogenase gene family | AT3G24503 | 44.538 | 4.84e-18 | 79.7 | |
| Pslu5g16498 | ACH | 13 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 62.372 | 0.0 | 651.0 | |
| Pslu5g16499 | . | 1 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 62.675 | 0.0 | 665.0 | |
| Pslu5g16502 | . | 1 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 60.679 | 0.0 | 632.0 | |
| Pslu5g16503 | . | 6 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 63.783 | 0.0 | 680.0 | |
| Pslu5g16507 | . | 7 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 68.889 | 0.0 | 721.0 | |
| Pslu6g12247 | . | 1 | 484 | Aldehyde Dehydrogenase gene family | AT4G36250 | 61.57 | 0.0 | 642.0 | |
| Pslu6g14662 | ACH | 19 | 556 | Aldehyde Dehydrogenase gene family | AT5G62530 | 75.836 | 0.0 | 868.0 | |
| Pslu6g14792 | . | 2 | 501 | Aldehyde Dehydrogenase gene family | AT1G74920 | 78.4 | 0.0 | 850.0 | |
| Pslu6g14837 | . | 2 | 538 | Aldehyde Dehydrogenase gene family | AT3G48000 | 79.074 | 0.0 | 893.0 | |
| Pslu6g15218 | . | 46 | 83 | Aldehyde Dehydrogenase gene family | AT3G66658 | 73.684 | 2.65e-11 | 58.2 |