AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g20758 ATGAATATTGAAATCATTGGGAGGCACGCGCTGCTCTTCGACGATGATACCAACGCCGCTTTCATAAACTCCGACGACGCACTCGTTGAATGGAATTCGCTGCTAATCGACCGTTACGACGTCCGGCATCTCCTTTCTACCCCTCCGCCGTCTCGACGGCGGCGCAATCCGCAAACGTCTCACTCATCTTCCGCTGATGCGGAAATCGATTATGAACGATATCTCGATCTCCCCTCACCTTCCGACGAACAAGAAGAAGATGCGAAACCGGAACCTGTGGGTGGATTTAATGCTGTTCCCTTTTCTTATGGAAACTATGAAGATCTTAATGATAAAAAGATTGCCGAGGCTGAATCGGAAATCTCTGGATTTCAACCCCCCTTTCCTGTCCCTGACAGCCTGGTTCAAAACTTGCCTCCTACGGAGAAGGTACATCAGATTATTGCAAGGACTGCTCTTTTTGTCAGCAAAAATGGAGGGCAATCTGAGATTGTTCTAAGGGTGAAGCAAGGAGACAACCCAACATTTGGATTCTTAATGCCTGACCATCACCTACATCCGTACTTTAGGTATCTGGTTGATCACCAAAATCTTCTGCAGTCGAAAGACGATGGACAGGCTGACAATGAGAAAACTTCCACTACTGAGAATGTTTCAGGAGCTGGAGCATTGTCGTTGCTTGGTTCTGTATATGGCACTGGTGAAGATGAGGACGGGGGAGCGGAACATGGGTTATCATCGGGAGGATATGCATCTGGGAGAACTGTTGATGTAGATGCCACCAACTCTGATGCACTAGGAAAAACTATCTTGCCAGCTGGCAAAGATGAACCTGTATCTATGCATTCACTTCCATCCAAGGAAGATGCCCCTGTTCAAAAAAGGAGTCCTTCACTAAATGCATTGAAAGCTGAACGAACTAGTAGTATGAGAAAAGGTGAGTCCCTGGGTTCACTTTCTGTTCTCCCAGATAAGTTGCGGGCTTCTTCTCTTCCTCCAATTCCCAAGACTGAGCAAATGGTCCTGGATCCTCCATCTGACATGAAACGCTTGGTTGACAAGATAGTAGAGTTCATCATCAAGAATGGGAGGCAGTTTGAGGCTGTACTTATGGAACAAGATCGCGGTCATGGAAGATTCCCATTTCTACTCCCATCTAATATATTCCATCCTTACTATCTAAAAGTTCTTCAGCAAGCCCAGGAGCCGAAGTTAACTGCCAAGAGTTTGCACAACGAGAAGGAAGATTTTAGAGGACATATTCCGAACAGGAAAAGGTCTATCTCAAGGGAGAATGGGGATAGAAGGGTGGAATCTGATGATATACCACTTGATTTTGATAGGAAAGAGAAGTTTAAGATGGTAATTAACAAAACTAAAAAGGAAAGTTTAGAAGGGCCAGCTAAAGCCCCACAACCTCAACTTGGAGTGCAGGTGGATGCTGCTCAAGCAGCTGCTATTCTTCAGGCTGCTACAAGAGGAATTAAACTTCCAAATTTAGGAATTCTCTCTGGGCAACCCTCTAATGAAGCTGAATCCTCTGAGGCACAAATGACTAATGAACAGAAACTGAAGGCAGAGAGGCTAAAACGGGCTAAGATGTTTGTGGCTCAGCTCAAAAGTGGAGTTGCTCCATCGAAAGTTGAACCCTCACGTGGGTTATCAGCCGAGCCACATGGATCAGGGGCTGACGACCGCCTTGCAGCCAAAGAGAGAGAGAGGAGCACAACCCCTTTAAGTTATGACCCTGCAGACAAAAAAGTAAAATCTGAAAAGGAACATTTGAATGAAGAAAGGCGGTCAAAGAGGAAGTACCGGGCTAGAGCGGAAACAGCAGAAGCGCTTGAAGATGATGAAGAAGATGATGGGGAGGTTGATGAGAGAGAAGGAAAAAGGTCACATAGACACCACTCGAAGAAGCACCGATCTCGTAATCGTTCTGATGAAGTTGACAGTGAAGAAAAAGATGATGAAGATAGTGATTATAAGCATGTAAAGAGAAGGCATCGATCTCATCGTACTTCTCATAAACAAGATGATATTGACAAAAACAATGAAGACAGGCATCATAAGTCATCAAGAAAGAAGAAGCACCGATCTTCTAGTTCTTATGAGGAAGATGATCACGGAAGTGACCATGAATATTCCAGAAAGATGCGCCGATCACGCTATTCTTCACATGAAGATTCTGATGATGGAGTTGACAGTGACCACAAATATTCTAGGAAAAAACACAAACATAGATCTCACAGGACTTCTCATCACAGTAGAGATAAGCATAGGAGAAGTCACTCTTCTAAACATAAAAAGAAGCTTGATGTCTCCTCAGAAGAGGGACAGAGGGAGCATAATAAGGCTGATAGGCATAAAAAGGGATTGAATTCGGATAGGGAAGAACTGGAAGAGGGGGAGATCAGCTCAAAATCGTCGGGTCGGTCGAGAGGGGAACAGCCAGTTGATGAAAAACCTTCGATTGATGTATCAAGTTCTCATCAAGGTCGGAGCTCGCCAAGTCAGCCCAGTGAGACAACTGAGGTTCCTGATGACCTCAGGGCCAAAATTAGAGCAATGCTGATGTCCACAATGTAA 2589 44.88 MNIEIIGRHALLFDDDTNAAFINSDDALVEWNSLLIDRYDVRHLLSTPPPSRRRRNPQTSHSSSADAEIDYERYLDLPSPSDEQEEDAKPEPVGGFNAVPFSYGNYEDLNDKKIAEAESEISGFQPPFPVPDSLVQNLPPTEKVHQIIARTALFVSKNGGQSEIVLRVKQGDNPTFGFLMPDHHLHPYFRYLVDHQNLLQSKDDGQADNEKTSTTENVSGAGALSLLGSVYGTGEDEDGGAEHGLSSGGYASGRTVDVDATNSDALGKTILPAGKDEPVSMHSLPSKEDAPVQKRSPSLNALKAERTSSMRKGESLGSLSVLPDKLRASSLPPIPKTEQMVLDPPSDMKRLVDKIVEFIIKNGRQFEAVLMEQDRGHGRFPFLLPSNIFHPYYLKVLQQAQEPKLTAKSLHNEKEDFRGHIPNRKRSISRENGDRRVESDDIPLDFDRKEKFKMVINKTKKESLEGPAKAPQPQLGVQVDAAQAAAILQAATRGIKLPNLGILSGQPSNEAESSEAQMTNEQKLKAERLKRAKMFVAQLKSGVAPSKVEPSRGLSAEPHGSGADDRLAAKERERSTTPLSYDPADKKVKSEKEHLNEERRSKRKYRARAETAEALEDDEEDDGEVDEREGKRSHRHHSKKHRSRNRSDEVDSEEKDDEDSDYKHVKRRHRSHRTSHKQDDIDKNNEDRHHKSSRKKKHRSSSSYEEDDHGSDHEYSRKMRRSRYSSHEDSDDGVDSDHKYSRKKHKHRSHRTSHHSRDKHRRSHSSKHKKKLDVSSEEGQREHNKADRHKKGLNSDREELEEGEISSKSSGRSRGEQPVDEKPSIDVSSSHQGRSSPSQPSETTEVPDDLRAKIRAMLMSTM 862
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g20758 862 MobiDBLite consensus disorder prediction 51 65 - -
Pslu1g20758 862 MobiDBLite consensus disorder prediction 740 769 - -
Pslu1g20758 862 MobiDBLite consensus disorder prediction 268 318 - -
Pslu1g20758 862 Coils Coil 595 622 - -
Pslu1g20758 862 MobiDBLite consensus disorder prediction 45 71 - -
Pslu1g20758 862 MobiDBLite consensus disorder prediction 644 665 - -
Pslu1g20758 862 Gene3D Surp module 336 405 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Pslu1g20758 862 Pfam Alternative splicing regulator 3 86 IPR019147 -
Pslu1g20758 862 ProSiteProfiles SURP motif repeat profile. 351 393 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Pslu1g20758 862 MobiDBLite consensus disorder prediction 300 315 - -
Pslu1g20758 862 SUPERFAMILY Surp module (SWAP domain) 126 194 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Pslu1g20758 862 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 3 847 IPR040397 GO:0000395(PANTHER)
Pslu1g20758 862 MobiDBLite consensus disorder prediction 675 689 - -
Pslu1g20758 862 SMART DRY-EERY-2 1 107 IPR019147 -
Pslu1g20758 862 SUPERFAMILY Surp module (SWAP domain) 325 400 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Pslu1g20758 862 SMART surpneu2 349 402 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Pslu1g20758 862 SMART surpneu2 145 198 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Pslu1g20758 862 MobiDBLite consensus disorder prediction 229 250 - -
Pslu1g20758 862 MobiDBLite consensus disorder prediction 770 821 - -
Pslu1g20758 862 Pfam Surp module 146 194 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Pslu1g20758 862 Pfam Surp module 349 399 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Pslu1g20758 862 MobiDBLite consensus disorder prediction 823 845 - -
Pslu1g20758 862 MobiDBLite consensus disorder prediction 563 613 - -
Pslu1g20758 862 Gene3D Surp module 140 195 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Pslu1g20758 862 MobiDBLite consensus disorder prediction 542 862 - -
Pslu1g20758 862 ProSiteProfiles SURP motif repeat profile. 147 189 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Pslu1g20758 862 MobiDBLite consensus disorder prediction 699 739 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g20758 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:149761516 Pslu2g00718 Pslu-Chr2:4547322 dispersed