AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pslu1g20810 | ATGAAGGTTCATTTCGCTCGTAATCTAAACTTAGCGTTGAGTTACCGCACAATCCTCGGTTATTCGAAAGTTAGGGTTACTAAGAAGAATTGTATTTTAGGTCGGTTTAACTTGTCGACTTGTGTTGCTCTTGATTCAGTGAAGAAGAGTATGGGTTCACAAGCGGCGGCTGAGGTTGAATGGCCGGCGAATAAAGTTAGAGATAGTTTTATTAAGTTTTTTGAAGATAAGAACCATGTGTACTGGAAATCAAGTCCTGTTGTTCCTGTTAACGATCCCACACTTCTGTTTGCTAATGCTGGTATGAATCAGTTCAAGCCAATCTTTTTGGGTACTGCTGATCCTAATACTCAATTGAGCAAACTGACTCGTGCCTGCAACACACAGAAGTGTATCAGAGCTGGTGGGAAGCATAATGATCTTGATGATGTTGGCAAAGACACTTATCATCACACCTTCTTTGAGATGCTTGGTAACTGGTCATTTGGTGATTATTTTAAAGAGGAAGCTATTGGATGGGCATGGGAGCTTCTCACAACGGTCTTTAAGCTACCTACTGATCGAATTTATGCTACTTATTTTGGTGGTGATGAGAAATTGGGCCTTCCTGCTGACGATGAAGCTAGAAATATATGGCTCAAATATCTTCCACCTGCACGAGTTTTGCCTTTTGGTTGTAAAGACAACTTCTGGGAGATGGGTGATACTGGGCCATGTGGACCATGTACTGAGATACACTTCGATAGAATTGGTGGTCGTGATGCTGCAGATTTGGTTAACAATGATGACCCTACATTGATTGAAATTTGGAATAATGTGTTTATTCAGTTTAACAGGGAGGCTGATGGTTCGTTGAAACCTTTGCCTGCTAAACACGTGGATACTGGTATGGGTTTTGAAAGATTGACTTCAATACTTCAGAACAAGATGAGCAACTATGATACTGATGTCTTCATACCTATCTTTGATGCGATCCAGCATGCAACTGGCGCTAGACCATATACAGGCAAAGTGGGTCCAGATGATATTGATGGTATTGACATGGCGTATAGAGTTGTAGCTGACCACATTAGAACTCTTTCATTTGCCATAGCAGATGGTTCACGTCCAGGTAATGAAGGGCGTGAATATGTTCTGCGACGTATTCTTCGCCGTGCCGTACGTTATGGAACTGAAGTATTGAAAGCACAGCAAGGATTCTTCAATGGATTGGTGAAAGTTGTGGTAGAATCAATGGGTCATGTTTTTCCTGAGCTAAAACAACAAGAGACCAACATTAGAGAGATTATAGCTGAAGAGGAAGCAAGTTTTGGGAGGACATTACTTCATGGAATCGAGAAGTTTAAGAGGACGGTTAAAGATGTTAAGGGGAAGAAATTTAGTGGACAGGATGCATTTGTGTTGTGGGATACTTTTGGATTTCCATTGGATCTGACACAGCTGATGGCAGAAGAAAAGGGGTTAGAGGTTGATGTTGATGGATTCAATCTTGCTATGAATGAAGCCAGAGAAAGATCGAGGAATGCTCAGAATAAGCAAGCTGCTGTTGCGATTGTCATGGATGCAGATGCGACTTCAGCACTGCATAAAAGAGGGGTGCCTACAACAAATGATAGTTATAAGTTCGAGTGGTTTAAGGAACATGAAAGTGAGATAAAAGCCATTTACACAGGCAGCGAGTACGTGGAATGTGCTGATGCTGGCGTTGATGTTGGTATAATTCTTAAGAGCACTAGTTTTTATGCTGAGCAAGGTGGTCAGATATTTGATACTGGACTACTTGAAGGATCCTTTGGCTCATTTGAAGTTTGTAATGTTCAAGTATATGGTGGTTTTGTTTTACATCTTGGTAAAATTACTGGGGAGTCTGCCAAGTTTCATGTGGGTGATAAAGTGATTTGCAAGGTTGACTATGAAAGGCGTCAGCGCATTGCTCCCAATCATACCTGCACACACATGTTAAATTTTGCTCTTAGGGAAGTACTAGGGGCTCATGTTGATCAGAAAGGATCCATTGTTCTTCCAGAAAAATTAAGATTTGACTTCTCTCATGGGAAACCCGTAAAACCAGAGGACCTCCACAGAATTGAATCAATTGTGAATGAATTAATTAAAGCTGAATTAGATGTTTCTGCGAAGGAGGCAAGCCTGGCCGCTGCTAAGCTGGTTAATGGTTTGCGGGCTGTTTTTGGTGAGGTGTATCCTGATCCAGTTAGAATTGTTGCAATTGGTCGACAAGTGGACGATCTTTTGGCTGATCCCGAAAATGAAGAATGGGTGTCCATATCTGCTGAGCTCTGTGGAGGGACTCATATTTCAAATACACGAGAGGCTAAGGCTTTTGTACTACTGTCTGAGGAGGGAATTGCCAAGGGGATTCGAAGAATTACTGCCGTAACAACAAGTTATGCTTTTGAGGCAATTAAAAAGGCAGCTGAACTCGAGCAGGAAGTTGATCAGGCATCGAAGCTGGAAGGAAGCCTTCTTGAACAGAAAGTGACCTCTTTAAATGGTCAAGTAGAGTCCGCCTCTATTTCATCTGCAAAGAAGGCTGATTTAAAGGCTAAAATTTCCATACTTCAGAATTTAGTAATAAAAGCAAAAAAGAAGGCTGCAGAAGAGAACATTCACAAAGCTGTTGAAGCTGCAATTAAGGCAGCAGAAGTTGCTTCTTCTGAAGGGGTACCCTTCTGCATTTCTCATGTTGCTGTAGGATCGGACACTACTGCTATTCGTGAAGCAGTTGTGAAAGTCATGGAACAGAAGGGAATGCCAGTGATGGTTTTTAGTACTGATGAACAATCAAAGAAGGCCTTAGTTTGTGCTGGTGTGCCGGAAAAAAGTGATAAAAGCAGCCAGTTGAAGGTTTTGGAGTGGCTGAAGGCGGCGTTGAAGCCACTCGAAGGGAAAGGTGGTGGAGGGAAAGGTGGTCTTGCTCAAGGCCAGGGACCCGATATAAACCATGTAGACGAAGCAATAGATGTTGCGAAGTCATTTGCAGCACTTAAACTAGGCTAA | 3018 | 42.18 | MKVHFARNLNLALSYRTILGYSKVRVTKKNCILGRFNLSTCVALDSVKKSMGSQAAAEVEWPANKVRDSFIKFFEDKNHVYWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTTVFKLPTDRIYATYFGGDEKLGLPADDEARNIWLKYLPPARVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGGRDAADLVNNDDPTLIEIWNNVFIQFNREADGSLKPLPAKHVDTGMGFERLTSILQNKMSNYDTDVFIPIFDAIQHATGARPYTGKVGPDDIDGIDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGTEVLKAQQGFFNGLVKVVVESMGHVFPELKQQETNIREIIAEEEASFGRTLLHGIEKFKRTVKDVKGKKFSGQDAFVLWDTFGFPLDLTQLMAEEKGLEVDVDGFNLAMNEARERSRNAQNKQAAVAIVMDADATSALHKRGVPTTNDSYKFEWFKEHESEIKAIYTGSEYVECADAGVDVGIILKSTSFYAEQGGQIFDTGLLEGSFGSFEVCNVQVYGGFVLHLGKITGESAKFHVGDKVICKVDYERRQRIAPNHTCTHMLNFALREVLGAHVDQKGSIVLPEKLRFDFSHGKPVKPEDLHRIESIVNELIKAELDVSAKEASLAAAKLVNGLRAVFGEVYPDPVRIVAIGRQVDDLLADPENEEWVSISAELCGGTHISNTREAKAFVLLSEEGIAKGIRRITAVTTSYAFEAIKKAAELEQEVDQASKLEGSLLEQKVTSLNGQVESASISSAKKADLKAKISILQNLVIKAKKKAAEENIHKAVEAAIKAAEVASSEGVPFCISHVAVGSDTTAIREAVVKVMEQKGMPVMVFSTDEQSKKALVCAGVPEKSDKSSQLKVLEWLKAALKPLEGKGGGGKGGLAQGQGPDINHVDEAIDVAKSFAALKLG | 1005 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pslu1g20810 | 1005 | PRINTS | Alanyl-tRNA synthetase signature | 139 | 150 | IPR002318 | GO:0000166(InterPro)|GO:0005737(InterPro) | |
| Pslu1g20810 | 1005 | PRINTS | Alanyl-tRNA synthetase signature | 351 | 367 | IPR002318 | GO:0000166(InterPro)|GO:0005737(InterPro) | |
| Pslu1g20810 | 1005 | PRINTS | Alanyl-tRNA synthetase signature | 267 | 278 | IPR002318 | GO:0000166(InterPro)|GO:0005737(InterPro) | |
| Pslu1g20810 | 1005 | PRINTS | Alanyl-tRNA synthetase signature | 294 | 307 | IPR002318 | GO:0000166(InterPro)|GO:0005737(InterPro) | |
| Pslu1g20810 | 1005 | PRINTS | Alanyl-tRNA synthetase signature | 375 | 388 | IPR002318 | GO:0000166(InterPro)|GO:0005737(InterPro) | |
| Pslu1g20810 | 1005 | FunFam | Alanine--tRNA ligase, cytoplasmic | 60 | 310 | - | - | |
| Pslu1g20810 | 1005 | SUPERFAMILY | ThrRS-AlaRS common domain | 636 | 808 | IPR018163 | GO:0000166(InterPro) | |
| Pslu1g20810 | 1005 | Gene3D | - | 888 | 1000 | - | - | |
| Pslu1g20810 | 1005 | ProSiteProfiles | Alanyl-transfer RNA synthetases family profile. | 61 | 810 | IPR018165 | GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro) | |
| Pslu1g20810 | 1005 | FunFam | Alanine--tRNA ligase, cytoplasmic | 637 | 812 | - | - | |
| Pslu1g20810 | 1005 | Coils | Coil | 492 | 512 | - | - | |
| Pslu1g20810 | 1005 | SUPERFAMILY | Class II aaRS and biotin synthetases | 62 | 313 | IPR045864 | - | |
| Pslu1g20810 | 1005 | PANTHER | ALANYL-TRNA SYNTHETASE | 58 | 1001 | IPR050058 | GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005739(PANTHER)|GO:0006419(PANTHER)|GO:0009507(PANTHER) | |
| Pslu1g20810 | 1005 | Hamap | Alanine--tRNA ligase [alaS]. | 61 | 1004 | IPR023033 | GO:0004813(InterPro) | |
| Pslu1g20810 | 1005 | Pfam | Threonyl and Alanyl tRNA synthetase second additional domain | 738 | 796 | IPR012947 | GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro) | |
| Pslu1g20810 | 1005 | Coils | Coil | 804 | 831 | - | - | |
| Pslu1g20810 | 1005 | Gene3D | - | 528 | 636 | - | - | |
| Pslu1g20810 | 1005 | NCBIfam | alanine--tRNA ligase | 65 | 983 | IPR002318 | GO:0000166(InterPro)|GO:0005737(InterPro) | |
| Pslu1g20810 | 1005 | SUPERFAMILY | Translation proteins | 562 | 636 | IPR009000 | - | |
| Pslu1g20810 | 1005 | Gene3D | - | 637 | 813 | - | - | |
| Pslu1g20810 | 1005 | FunFam | Alanine--tRNA ligase | 892 | 1000 | - | - | |
| Pslu1g20810 | 1005 | Coils | Coil | 850 | 870 | - | - | |
| Pslu1g20810 | 1005 | Gene3D | Bira Bifunctional Protein; Domain 2 | 62 | 310 | IPR045864 | - | |
| Pslu1g20810 | 1005 | SMART | tRNA-SAD-4 | 738 | 797 | IPR012947 | GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro) | |
| Pslu1g20810 | 1005 | FunFam | Alanine--tRNA ligase | 535 | 635 | - | - | |
| Pslu1g20810 | 1005 | Pfam | tRNA synthetases class II (A) | 65 | 640 | IPR018164 | GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro) | |
| Pslu1g20810 | 1005 | SUPERFAMILY | Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) | 314 | 514 | IPR018162 | GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro) | |
| Pslu1g20810 | 1005 | CDD | AlaRS-core | 63 | 309 | - | - | |
| Pslu1g20810 | 1005 | Pfam | DHHA1 domain | 866 | 999 | IPR003156 | GO:0003676(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pslu1g20810 | K01872 | alanyl-tRNA synthetase [EC:6.1.1.7] |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 4374028 | Pslu | Pslu1g20810 | Pslu-Chr1:150035524 | Pslu4g16098 | Pslu-Chr4:115825077 | |
| 4478750 | Pslu | Pslu1g20810 | Pslu-Chr1:150035524 | Pslu7g09251 | Pslu-Chr7:70923309 |