Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pslu1g20844	ATGGCTGCTGCTGCTTTTTCATCCACAATCCCACCCCCAAATTCATCTTCTTCTTCACCATTTCTGAAAAACTTCCTTTCTTCACAATCACCCCTTGTTCAATTCAAGAAAACCGGTTCACCCAAACCGTTTACCGTTTCCTGTGTCATTGCTAAACCGTCATCGGTGCAAATGGGGTCGGTTCAGGATGAACCGTCGATCCTTCAACGACCCGATTCATTCGGCCGGTTTGGTAAGTATGGTGGCAAATATGTGCCTGAAACCCTAATGTATGCTCTTACAGAACTTGAATCTGCTTTTAAAGCCCTTGCTACTGACCATCAATTCCAGAAGGAATTAGATGGGATATTGAAGGATTATGTTGGTAGGGAAAGCCCTCTCTATTTTGCCGAACGACTTACAGAACATTATAAACGTCCTAATGGCGAAGGTCCTGAAATATATCTTAAGAGAGAAGATCTTAACCATACTGGTGCACATAAGATCAATAACGCAGTTGCACAAGCTTTGCTGGCCAAGAAGTTAGGGAAAGAGAGAATCATTGCAGAAACTGGTGCTGGGCAGCATGGAGTTGCTACCGCCACTGTATGTGCTCGATTTGGGTTGAAATGTATAATTTATATGGGTGCTCAAGATATGGAACGGCAAGCTCTTAATGTGTTCAGAATGAAGCTCCTTGGAGCAGAGGTTAGAGCAGTTCATTCGGGGACAGCCACACTGAAGGATGCTACATCAGAGGCCATAAGGGACTGGGTGACTAACGTGGAAACAACCCATTACATTTTGGGCTCTGTTGCAGGCCCACATCCCTACCCCATGATGGTACGGGAGTTTCATGCAGTAATTGGTAAAGAAACAAGAAAGCAAGCATTGGAAAAATGGGGAGGAAAACCAGATGTGTTGGTTGCTTGTGTTGGTGGAGGGTCAAATGCTATGGGCCTGTTTCATGAGTTTGTTGATGACAAAGAAGTTAGATTGATTGGAGTTGAGGCTGCGGGTTTTGGTCTAGACAGTGGAAAACATGCAGCAACGTTAACAAAAGGAGAGGTCGGTGTGTTGCATGGAGCCATGAGCTACTTGTTACAGGATGACGATGGTCAAATTATTGAGCCTCACTCCATTAGTGCAGGGCTGGACTACCCAGGAGTTGGACCAGAGCACAGTTTCCTGAAAGATTTAGGCCGGGCTGAATATCATAGCATTACTGATGAGGAAGCCTTGGAAGCTTTTAAGAGATTGTCGAGATTAGAGGGCATAATCCCAGCTCTAGAAACATCTCATGCACTCGCTTATCTGGAGAAGCTATGTCCAACACTACCTAATGGCACCAAGGTTGTGCTTAACTGCAGTGGTAGAGGAGACAAAGATGTTCATACTGCTATCAAGTATTTGCAGGTTTAA	1401	44.83	MAAAAFSSTIPPPNSSSSSPFLKNFLSSQSPLVQFKKTGSPKPFTVSCVIAKPSSVQMGSVQDEPSILQRPDSFGRFGKYGGKYVPETLMYALTELESAFKALATDHQFQKELDGILKDYVGRESPLYFAERLTEHYKRPNGEGPEIYLKREDLNHTGAHKINNAVAQALLAKKLGKERIIAETGAGQHGVATATVCARFGLKCIIYMGAQDMERQALNVFRMKLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEFVDDKEVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDLGRAEYHSITDEEALEAFKRLSRLEGIIPALETSHALAYLEKLCPTLPNGTKVVLNCSGRGDKDVHTAIKYLQV	466

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pslu1g20844	466	CDD	Trp-synth-B	92	459	IPR006654	GO:0004834(InterPro)\|GO:0006568(InterPro)
	Pslu1g20844	466	Hamap	Tryptophan synthase beta chain [trpB].	70	464	IPR023026	GO:0000162(InterPro)\|GO:0004834(InterPro)
	Pslu1g20844	466	FunFam	Tryptophan synthase beta chain	278	457	-	-
	Pslu1g20844	466	SUPERFAMILY	Tryptophan synthase beta subunit-like PLP-dependent enzymes	71	464	IPR036052	-
	Pslu1g20844	466	ProSitePatterns	Tryptophan synthase beta chain pyridoxal-phosphate attachment site.	154	168	IPR006653	GO:0004834(InterPro)\|GO:0006568(InterPro)
	Pslu1g20844	466	Pfam	Pyridoxal-phosphate dependent enzyme	123	451	IPR001926	-
	Pslu1g20844	466	PANTHER	TRYPTOPHAN SYNTHASE-RELATED	60	465	IPR023026	GO:0000162(PANTHER)\|GO:0000162(InterPro)\|GO:0004834(InterPro)\|GO:0004834(PANTHER)\|GO:0005737(PANTHER)\|GO:0009570(PANTHER)
	Pslu1g20844	466	Gene3D	-	122	457	IPR036052	-
	Pslu1g20844	466	PIRSF	Trp-syn-beta	62	466	IPR023026	GO:0000162(InterPro)\|GO:0004834(InterPro)
	Pslu1g20844	466	FunFam	Tryptophan synthase beta chain	123	277	-	-
	Pslu1g20844	466	Gene3D	-	77	279	IPR036052	-
	Pslu1g20844	466	NCBIfam	tryptophan synthase subunit beta	75	463	IPR006654	GO:0004834(InterPro)\|GO:0006568(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pslu1g20844	K01696	tryptophan synthase beta chain [EC:4.2.1.20]

Event-related genes

Select	Gene_1	Gene_2	Event_name
	134853	Pslu1g20844	Pslu3g16112

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Pslu	Pslu-Chr1:30864908	Pslu1g20844	Pslu-Chr1:150184957	dispersed
	Pslu	Pslu-Chr1:150184957	Pslu3g16112	Pslu-Chr3:115880532	wgd