AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pslu1g20925 | ATGGGTGCCGAAGGGATGGTTTTGTTCATATCAATTGTTGTTCTACTTTTCCCTTTGGCAACAACATCAGCAGCAATGGTTTCAGAAAGCAATGTTGAAGAAACGATGGATGATAAAACGGTTGAACTATTATGGGCCAACGATATTCATTTTCCTGTTTCCATTGAAGATGAACATATTAGAAGGCCTAATTCTGTTCCTATAAGACGCAAGTTGACTGAAGAAAGTGATTATACTTATATGGATGAAGATATAGAAATAGAACCAATTCCGTTTACTGTTTCTAAAGCAGAGACGGGTGGGGGTGGTATAGATACTACAACAATTATTATTGCTGTTGTATCTACTGCAATTGTGACGTTTCTTCTTGCTACGCTTCTCTTTTGTTGGTATACTAGGACTTATGGTGGGATACAAACAGATGAAAAGCCTCCTCTCAGCTTAAGTATGGGTGCTTCACAAAAAACTTCATTTAGTTTTCATAACTCTGTAAAAGATCCCAGCAATGCTGGCAATCGGTCGTCATTTAACAAGTCAGACCTACAGAAAAAATATTCCTCTGTGAACTCAAGTGTATCATTAGGTATCCCGTTAGAGCCACCACCTGGGAATTTAGCTGCTGCTGGAATAGCTCCTCTGAAACCGCCACCTGGCAGGCCCGAATTGGCTTTAAAGACTCCACCCACTCTAAATACATCATCTCCTCCTAATGTATCACCTTCATCTGCAGCTCCAGCTACCTTCACTTCTAGTTCTATTCGAGCTCCGTCAGCTAGACGGGCCCCATCAGCTAGACGAGCTCCATCAGCCAGACGACCACCAACTTCTGGTGCACCACCGCCTCCACCACCATCTGCAAAACCTCCACCACCACCACCGCCACTCAAGAAAGGTCCAGCTCCACCACCGCCTCCAAGCGGTGGTAAACCTCCGTCTAAACTACCTCGTCCTTCATCTGGACAAGATGAGCCCGATGGTGATGATTCTAACAAAGCTAAGTTGAAGCCGTTCTTTTGGGATAAGGTTATGGCTAGCCCTGATCAAGCAATGGTTTGGCATCAGATTAGAGCTGGGTCATTCCAGTTCAATGAAGAGATGATAGAAAATCTATTTGGATATAATGCTGCTGCTGAGAAAAACAAAGGTGGTGGAAACAACAAGAAGAGTTCGTCACAAGATCCCTCTTCGAATTTTGTTCAAATTATTGATCCAAAGAAGGCCCAAAATTTGTCTATTCTTCTTAAAGCGCTCAATGTGACAACAAATGAAGTTTGTGATGCACTGAAAGAAGGAAATGAGCTCCCTATAGAACTTATTCAAACATTGCTAAAAATGGCACCAACTGCAGAGGAAGAATTGAAGTTAAGGCTGTATAACGGGGATATTTCTCGCCTTGGAACTGCAGAACGGTTTCTTAAAAAGCTGGTTGAAATACCATTTGCTTATAAAAGGCTCGAGTCTTTGCTTTTTATGTGCACACTTCAAGAGGAGGTAGATATAATTAAGGAGTCCTTCCAAACCTTAGAGGCTGCATGTATAGAACTTAAAAAGAGCAGGTTGTTCCTCAAACTCTTAGAAGCTGTTTTAAAAACCGGAAATCGTATGAACGATGGAACATTCCGTGGGAGTGCACAAGCTTTCAAACTCGACACACTATTAAAACTTTCAGACGTGAAAGGAACAGATGGGAAAACTACTCTTTTACATTTTGTAGTTGTGGAGATCATTCGGGCAGAAGGTATAAGAGCAGCCAAAACTGCCCGTGAAACCAACAGTTTCTCGAGCTTTAAAACTGTTGATCTCTTAGAAGAATCTCCTAATCAAGATTCAGATGAATATTATCGAACTCTTGGCCTTCAGGTGGTCTCCAGTTTAAGTAACGAACTCGAAGATGTTAAAAAAGCAGCCATTCTTGATGCTGATGGGTTGACTGGTACGGTTTCTAAATTTGGCCAAGCACTCACAAAAGCTCGCGAGTTTTTAAATACAGATCTAAAGAACATACAAAAGGAGAAAAATGAGGATGAAGACGAATTTGCGGTGATTTTGTCGAATTTTATGGAAGATTCTGAGAAGGATGTGAATTGGATGCTTGAAGAAGAAAAGCGAATAATGGCGCTTGTGAAGAATACTGGTGATTACTTCCATGGACAGCCCGGGAAGGATGAGGGGTTGCGGTTGTTTGTGATTGTTCGTGATTTTTTGATAATTTTAGAGAAGGTGTGTAAAGAGATATCAACTACTCCTCTTTTAAGGCCATCCAAGCCAGCTGAGAAGAAAGACGATTCATCTTCTAAAACGATAGAAACGAAAGATAATTCATCACCCAAGACAGTAGATACGAAAGATGATTCATCAACTAAGACAACAGAAACGAAAGATGATTTCCCATCTACGACAACAGACGCAAAAGGTGTTTCAACACCTACAACGACAGACTCAAAGGATGTTATAGAACCTACTACGACAGACACAAAAGATGTTTCCGAACCTATGACGACAGATATAAAAGATGTTTCAGAACCTTCGACGACGGACACAAATAATGTTTCAGAACCTACAACTACAGACACAAAAGATGTTTCACCGCCTACTACGGCAGATGCAAATGATGTATCATCACCTATGAGAACAGAAACAAATGCTGTTCTGTCGCCACAAAACACTGACGATCTAGAACCTGAGACACAGATAACTGATAATCAACAACATGAAACTGATCGGTTGGCTGAGACGCAGGAAGATGATGATTTGAGACCAAAGAACCATCAAGATGATGATTTACAACATGAAACATTGGAATCTGCGAATTCACTGGACAAGATACAGGATGATGATGAGGATGATGAGGATTTACAATCTAAGTTGCGTGAATATGATGAGTCGCAACCAAAGACACGTGAAACTGATGATTCAAGGCATGAAACGCAGGAGACGGATCATTCACTACATGAACAGGAAGCTGATAATATTAAAAAGCACGAAGATGAAGATTTGGGGTCTAAGACACATGAACGTGATGATTCAAAACATAATACACAGGAAGATAACGAGTGGCAACATAAGACGCATGAATATATTGATTTGCAACTCAAGACTGGAAAGCAGGTTGGGGCAACAAGTGAAAGATCTTCAGAACCTCACCCATCCACTTTTCGTGTTCCACATGAAAGACTTATTCCTGCAATTGCAATGAGGCGGGTGGATACGTTTAGTAGTTCAAGTTCAGAAGAGGACTAA | 3240 | 41.08 | MGAEGMVLFISIVVLLFPLATTSAAMVSESNVEETMDDKTVELLWANDIHFPVSIEDEHIRRPNSVPIRRKLTEESDYTYMDEDIEIEPIPFTVSKAETGGGGIDTTTIIIAVVSTAIVTFLLATLLFCWYTRTYGGIQTDEKPPLSLSMGASQKTSFSFHNSVKDPSNAGNRSSFNKSDLQKKYSSVNSSVSLGIPLEPPPGNLAAAGIAPLKPPPGRPELALKTPPTLNTSSPPNVSPSSAAPATFTSSSIRAPSARRAPSARRAPSARRPPTSGAPPPPPPSAKPPPPPPPLKKGPAPPPPPSGGKPPSKLPRPSSGQDEPDGDDSNKAKLKPFFWDKVMASPDQAMVWHQIRAGSFQFNEEMIENLFGYNAAAEKNKGGGNNKKSSSQDPSSNFVQIIDPKKAQNLSILLKALNVTTNEVCDALKEGNELPIELIQTLLKMAPTAEEELKLRLYNGDISRLGTAERFLKKLVEIPFAYKRLESLLFMCTLQEEVDIIKESFQTLEAACIELKKSRLFLKLLEAVLKTGNRMNDGTFRGSAQAFKLDTLLKLSDVKGTDGKTTLLHFVVVEIIRAEGIRAAKTARETNSFSSFKTVDLLEESPNQDSDEYYRTLGLQVVSSLSNELEDVKKAAILDADGLTGTVSKFGQALTKAREFLNTDLKNIQKEKNEDEDEFAVILSNFMEDSEKDVNWMLEEEKRIMALVKNTGDYFHGQPGKDEGLRLFVIVRDFLIILEKVCKEISTTPLLRPSKPAEKKDDSSSKTIETKDNSSPKTVDTKDDSSTKTTETKDDFPSTTTDAKGVSTPTTTDSKDVIEPTTTDTKDVSEPMTTDIKDVSEPSTTDTNNVSEPTTTDTKDVSPPTTADANDVSSPMRTETNAVLSPQNTDDLEPETQITDNQQHETDRLAETQEDDDLRPKNHQDDDLQHETLESANSLDKIQDDDEDDEDLQSKLREYDESQPKTRETDDSRHETQETDHSLHEQEADNIKKHEDEDLGSKTHERDDSKHNTQEDNEWQHKTHEYIDLQLKTGKQVGATSERSSEPHPSTFRVPHERLIPAIAMRRVDTFSSSSSEED | 1079 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pslu1g20925 | 1079 | MobiDBLite | consensus disorder prediction | 273 | 312 | - | - | |
| Pslu1g20925 | 1079 | MobiDBLite | consensus disorder prediction | 751 | 1023 | - | - | |
| Pslu1g20925 | 1079 | MobiDBLite | consensus disorder prediction | 836 | 896 | - | - | |
| Pslu1g20925 | 1079 | MobiDBLite | consensus disorder prediction | 1035 | 1058 | - | - | |
| Pslu1g20925 | 1079 | MobiDBLite | consensus disorder prediction | 158 | 182 | - | - | |
| Pslu1g20925 | 1079 | MobiDBLite | consensus disorder prediction | 207 | 333 | - | - | |
| Pslu1g20925 | 1079 | SMART | it6-source | 324 | 753 | IPR015425 | - | |
| Pslu1g20925 | 1079 | MobiDBLite | consensus disorder prediction | 226 | 257 | - | - | |
| Pslu1g20925 | 1079 | Gene3D | Formin, FH2 domain | 331 | 778 | IPR042201 | - | |
| Pslu1g20925 | 1079 | MobiDBLite | consensus disorder prediction | 897 | 940 | - | - | |
| Pslu1g20925 | 1079 | PANTHER | FORMIN-RELATED | 105 | 1073 | IPR027643 | GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro) | |
| Pslu1g20925 | 1079 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 324 | 764 | IPR015425 | - | |
| Pslu1g20925 | 1079 | MobiDBLite | consensus disorder prediction | 754 | 798 | - | - | |
| Pslu1g20925 | 1079 | MobiDBLite | consensus disorder prediction | 799 | 829 | - | - | |
| Pslu1g20925 | 1079 | Coils | Coil | 658 | 678 | - | - | |
| Pslu1g20925 | 1079 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 279 | 746 | - | - | |
| Pslu1g20925 | 1079 | MobiDBLite | consensus disorder prediction | 955 | 1023 | - | - | |
| Pslu1g20925 | 1079 | Pfam | Formin Homology 2 Domain | 329 | 737 | IPR015425 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pslu1g20925 | K28090 | formin |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 134868 | Pslu1g20925 | Pslu2g00634 | |
| 134869 | Pslu1g20925 | Pslu3g16156 |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 4374119 | Pslu | Pslu1g20925 | Pslu-Chr1:150729573 | Pslu5g14341 | Pslu-Chr5:105521623 | |
| 4513951 | Pslu | Pslu1g20925 | Pslu-Chr1:150729573 | Pslu2g00634 | Pslu-Chr2:4049037 | |
| 4521037 | Pslu | Pslu1g20925 | Pslu-Chr1:150729573 | Pslu3g16156 | Pslu-Chr3:116137539 |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Pslu1g00396 | . | 309 | 749 | FH2 protein (formin) gene family | AT4G15200 | 54.23 | 1.36e-155 | 470.0 | |
| Pslu1g07738 | ACH | 193 | 566 | FH2 protein (formin) gene family | AT5G07770 | 37.284 | 3.26e-72 | 239.0 | |
| Pslu1g07739 | . | 53 | 150 | FH2 protein (formin) gene family | AT2G25050 | 50.505 | 6.43e-26 | 98.2 | |
| Pslu1g07740 | ACH | 693 | 1105 | FH2 protein (formin) gene family | AT2G25050 | 63.923 | 1.14e-167 | 520.0 | |
| Pslu1g20925 | ACH | 422 | 870 | FH2 protein (formin) gene family | AT5G54650 | 67.32 | 0.0 | 600.0 | |
| Pslu2g00634 | ACH | 447 | 873 | FH2 protein (formin) gene family | AT3G05470 | 48.098 | 5.60e-121 | 383.0 | |
| Pslu2g01209 | . | 1234 | 1623 | FH2 protein (formin) gene family | AT5G07740 | 61.735 | 3.17e-158 | 487.0 | |
| Pslu2g01210 | ACH | 1244 | 1615 | FH2 protein (formin) gene family | AT5G07740 | 45.04 | 1.41e-83 | 276.0 | |
| Pslu2g01212 | ACH | 1215 | 1639 | FH2 protein (formin) gene family | AT5G07740 | 68.192 | 0.0 | 599.0 | |
| Pslu2g01213 | . | 52 | 805 | FH2 protein (formin) gene family | AT5G07650 | 37.672 | 1.58e-155 | 473.0 | |
| Pslu2g02770 | ACH | 430 | 884 | FH2 protein (formin) gene family | AT5G67470 | 68.192 | 0.0 | 608.0 | |
| Pslu2g05781 | . | 441 | 849 | FH2 protein (formin) gene family | AT5G54650 | 61.125 | 2.35e-157 | 488.0 | |
| Pslu2g07654 | . | 1 | 760 | FH2 protein (formin) gene family | AT1G70140 | 44.691 | 0.0 | 585.0 | |
| Pslu2g16382 | . | 1 | 431 | FH2 protein (formin) gene family | AT1G31810 | 70.302 | 0.0 | 690.0 | |
| Pslu3g16156 | ACH | 422 | 900 | FH2 protein (formin) gene family | AT5G54650 | 64.343 | 0.0 | 608.0 | |
| Pslu3g17113 | . | 127 | 884 | FH2 protein (formin) gene family | AT3G05470 | 49.233 | 0.0 | 607.0 | |
| Pslu4g02223 | ACH | 432 | 884 | FH2 protein (formin) gene family | AT5G67470 | 72.985 | 0.0 | 647.0 | |
| Pslu5g04207 | . | 591 | 1023 | FH2 protein (formin) gene family | AT3G25500 | 66.82 | 0.0 | 580.0 | |
| Pslu5g13599 | . | 276 | 759 | FH2 protein (formin) gene family | AT1G70140 | 50.787 | 8.92e-156 | 474.0 | |
| Pslu5g14341 | . | 421 | 900 | FH2 protein (formin) gene family | AT5G54650 | 60.489 | 0.0 | 538.0 | |
| Pslu6g14549 | ACH | 1214 | 1644 | FH2 protein (formin) gene family | AT5G07740 | 75.737 | 0.0 | 689.0 | |
| Pslu6g14788 | . | 283 | 728 | FH2 protein (formin) gene family | AT1G70140 | 52.137 | 4.65e-155 | 466.0 | |
| Pslu7g09960 | . | 591 | 1007 | FH2 protein (formin) gene family | AT3G25500 | 58.118 | 1.95e-162 | 495.0 | |
| Pslu7g12032 | . | 553 | 1018 | FH2 protein (formin) gene family | AT3G25500 | 71.069 | 0.0 | 680.0 |