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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g20929 ATGGGCCCAGAACAATTTTATGGTTACAGAGTGACCGGTCAAGGCTTAACTTACTCCCCTTCTTACCCTCAAAAGCCCGTGGTTCCCACACAGCTGATAAAGTCTGAGGCACGAGACTCACCCAATTGTCCCTTTGTAAGCCCGTTTGATTCAGAGACATTCACTACATTGAGCTCAGGTGCTAGTCCTTCTTCTCTGGAAGATTGTAGCTCGTTTAACCATTCAGGCTCATCTACTTTTGTGCAAAGTGGCAGTATTCAGTACATGAGAAATGCTCTTCAGGATATAGAGACTACTCTAATGGCTCCAGATGAGGAAGTATCCACGCCGATGAATCCTTCAGCTGGTCAAACCAGGTGGCCACAACAGTTGACCCATGAACCAACTGGTTCAAAGTTGGTGCACCCCCAGGCTGTATATGGTCCAAGATACAGTCTATCTAGAAACAACAACCACAACAACAACAACAACAACAACAATAATCTAAAGCAGTTGCTTATTGCATGTGCAAGTGCTTTAGCTGGGAACAAGATTAACGACTTTGAGGTTTTAGTGGAACACGCACGGGCTGCTGTGTCTATTAGTGGCGACCCGATTCAGAGGTTAGGAGCATATATGGTGGAGGGGTTGGTGGCTAGGAGGGAATTATCCGGGAGTAATATATATCGAGCCCTAAAGTGTCGGGAACCTGAAGGGAAAGACTTACTTTCTTACATGCATATTTTATATGAAATATGCCCTTATTTGAAATTCGGGTATATGGCTGCAAATGGCGCTATAGCTGAAGCTTGTAGAAATGAAGACCGAATCCACATCATAGACTACCAAATAGCTCAAGGGACTCAATGGATGACTCTTCTACAAGCACTTGCGGCTCGACCGGGCGGGCCACCTCATGTTCGTATCACTGGAATCGATGATCCAGTCTCAAAATACGCCCGCGGAGATTGCTTGGAGATAGTGGGAAAACGTTTAGAGGCAGTTTCACAAAAATTCAACATTCCAATCGAGTTTCATCCACTTCCAGTTTATGCCCCGTTTGTAACTAAAGAGATGCTTGATGTTAGACCCGGTGAAGCCCTGGCGGTTAACTTCCCATTTCAACTTCACCACATGCCTGATGAAAGCGTTGATGTGAATAACCCGAGAGACGAGCAGTTAAGAATGGTGAAGTCACTTTCACCCAAAGTGGTTACTCTAGTTGAGCAAGAATCGAACACAAACACAGCTGCTTTCTTTCCAAGATTTGTGGAAGTGCTTGACTACTACTCTGCAATGTTTGAGTCAATGGATGCAACGTTGGCACGGGATAGAAAAGACAGAATAAATGTGGAACAACACTGTCTGGCTCGAGACATAGTCAACATCATAGCTTGCGAAGGTAAGGAGAGAGTAGAAAGGCACGAGCTTTTTGGGAAGTGGCGGTCTAGGTTAACAATGGCAGGTTTCAAACAGTATCCATTGAGTTCATATGTGAATTCAGTAATCAAAAATTTGCTAAAATGTTACTCGGAGCATTATACGTTGGTCGAGAAAGATGGAGCTATGCTGTTGGGTTGGAAAGATAGGAATCTTGTATCAGCATCTGCTTGGCACTGA 1599 44.47 MGPEQFYGYRVTGQGLTYSPSYPQKPVVPTQLIKSEARDSPNCPFVSPFDSETFTTLSSGASPSSLEDCSSFNHSGSSTFVQSGSIQYMRNALQDIETTLMAPDEEVSTPMNPSAGQTRWPQQLTHEPTGSKLVHPQAVYGPRYSLSRNNNHNNNNNNNNNLKQLLIACASALAGNKINDFEVLVEHARAAVSISGDPIQRLGAYMVEGLVARRELSGSNIYRALKCREPEGKDLLSYMHILYEICPYLKFGYMAANGAIAEACRNEDRIHIIDYQIAQGTQWMTLLQALAARPGGPPHVRITGIDDPVSKYARGDCLEIVGKRLEAVSQKFNIPIEFHPLPVYAPFVTKEMLDVRPGEALAVNFPFQLHHMPDESVDVNNPRDEQLRMVKSLSPKVVTLVEQESNTNTAAFFPRFVEVLDYYSAMFESMDATLARDRKDRINVEQHCLARDIVNIIACEGKERVERHELFGKWRSRLTMAGFKQYPLSSYVNSVIKNLLKCYSEHYTLVEKDGAMLLGWKDRNLVSASAWH 532
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g20929 532 Pfam GRAS domain family 162 531 IPR005202 -
Pslu1g20929 532 ProSiteProfiles GRAS family profile. 153 532 IPR005202 -
Pslu1g20929 532 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 149 531 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g20929 K27748 scarecrow-like transcription factor PAT
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4374122 Pslu Pslu1g20929 Pslu-Chr1:150757060 Pslu2g00723 Pslu-Chr2:4578943
4478786 Pslu Pslu1g20929 Pslu-Chr1:150757060 Pslu5g15247 Pslu-Chr5:111520376
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Pslu1g02358 . 1 654 GRAS Transcription Factor family AT1G63100 51.039 0.0 564.0
Pslu1g02516 . 205 555 GRAS Transcription Factor family AT4G00150 47.778 3.26e-104 326.0
Pslu1g02623 . 170 547 GRAS Transcription Factor family AT3G03450 27.39 5.12e-53 186.0
Pslu1g02624 . 130 547 GRAS Transcription Factor family AT3G03450 28.539 1.25e-52 185.0
Pslu1g02625 . 98 547 GRAS Transcription Factor family AT3G03450 29.228 4.40e-59 203.0
Pslu1g06432 . 39 444 GRAS Transcription Factor family AT1G55580 45.036 8.62e-110 328.0
Pslu1g06578 . 108 489 GRAS Transcription Factor family AT5G48150 66.754 0.0 542.0
Pslu1g08905 ACH 241 584 GRAS Transcription Factor family AT5G66770 27.042 3.53e-19 89.0
Pslu1g08907 ACH 206 584 GRAS Transcription Factor family AT5G66770 26.904 3.13e-21 95.1
Pslu1g11684 . 73 717 GRAS Transcription Factor family AT2G37650 54.394 0.0 665.0
Pslu1g17080 . 11 767 GRAS Transcription Factor family AT1G07530 45.276 0.0 608.0
Pslu1g20207 . 87 555 GRAS Transcription Factor family AT4G00150 49.005 1.87e-157 464.0
Pslu1g20725 . 171 545 GRAS Transcription Factor family AT3G03450 33.673 1.65e-62 212.0
Pslu1g20929 . 118 489 GRAS Transcription Factor family AT5G48150 65.323 6.51e-178 508.0
Pslu1g21526 . 40 490 GRAS Transcription Factor family AT5G48150 61.269 0.0 570.0
Pslu2g00415 . 40 444 GRAS Transcription Factor family AT1G55580 49.417 1.81e-126 373.0
Pslu2g00723 . 63 490 GRAS Transcription Factor family AT5G48150 69.495 0.0 625.0
Pslu2g00900 . 149 507 GRAS Transcription Factor family AT1G66350 35.789 4.10e-75 244.0
Pslu2g02748 . 12 409 GRAS Transcription Factor family AT3G49950 61.111 0.0 518.0
Pslu2g02776 . 1 530 GRAS Transcription Factor family AT4G37650 56.553 0.0 546.0
Pslu2g03020 ACH 37 485 GRAS Transcription Factor family AT4G36710 47.391 1.78e-132 390.0
Pslu2g03060 . 2 584 GRAS Transcription Factor family AT5G66770 54.209 0.0 547.0
Pslu3g11349 . 73 714 GRAS Transcription Factor family AT2G37650 46.686 0.0 568.0
Pslu3g12825 ACH 29 639 GRAS Transcription Factor family AT5G52510 44.728 1.61e-134 405.0
Pslu3g13933 . 141 530 GRAS Transcription Factor family AT4G37650 54.0 1.39e-140 410.0
Pslu3g15939 . 40 444 GRAS Transcription Factor family AT1G55580 50.608 2.16e-122 362.0
Pslu4g00130 ACH 30 639 GRAS Transcription Factor family AT5G52510 40.566 3.88e-124 379.0
Pslu4g00768 . 86 767 GRAS Transcription Factor family AT1G07530 45.718 0.0 563.0
Pslu4g02237 . 433 505 GRAS Transcription Factor family AT4G37650 47.945 2.63e-13 61.2
Pslu4g02379 ACH 37 486 GRAS Transcription Factor family AT4G36710 49.892 4.26e-142 416.0
Pslu4g02803 . 37 586 GRAS Transcription Factor family AT2G01570 61.676 0.0 670.0
Pslu4g03409 . 13 530 GRAS Transcription Factor family AT1G14920 63.956 0.0 680.0
Pslu4g08210 . 1 525 GRAS Transcription Factor family AT4G17230 53.047 0.0 546.0
Pslu4g09140 . 4 482 GRAS Transcription Factor family AT1G50420 62.781 0.0 602.0
Pslu4g16384 . 8 405 GRAS Transcription Factor family AT5G41920 64.619 0.0 518.0
Pslu5g00490 ACH 155 516 GRAS Transcription Factor family AT5G17490 23.846 1.27e-14 74.3
Pslu5g00499 ACH 137 515 GRAS Transcription Factor family AT5G17490 24.129 9.11e-19 87.0
Pslu5g00500 . 136 515 GRAS Transcription Factor family AT5G17490 24.324 1.69e-16 80.1
Pslu5g09182 . 144 518 GRAS Transcription Factor family AT5G17490 34.129 9.45e-53 184.0
Pslu5g09312 . 301 767 GRAS Transcription Factor family AT1G07530 50.641 1.01e-167 494.0
Pslu5g09320 . 577 700 GRAS Transcription Factor family AT2G37650 48.0 9.28e-41 142.0
Pslu5g09322 . 389 638 GRAS Transcription Factor family AT1G07530 52.4 3.10e-88 279.0
Pslu5g09323 . 389 768 GRAS Transcription Factor family AT1G07530 51.969 1.38e-146 436.0
Pslu5g09325 . 44 268 GRAS Transcription Factor family AT3G46600 32.653 8.27e-19 84.3
Pslu5g09330 . 20 766 GRAS Transcription Factor family AT1G07530 46.224 0.0 612.0
Pslu5g09492 . 25 592 GRAS Transcription Factor family AT1G21450 53.713 0.0 583.0
Pslu5g12815 . 1 582 GRAS Transcription Factor family AT2G01570 60.87 0.0 679.0
Pslu5g13931 . 87 555 GRAS Transcription Factor family AT4G00150 44.834 1.89e-147 439.0
Pslu5g14344 . 2 409 GRAS Transcription Factor family AT3G49950 44.681 3.96e-119 352.0
Pslu5g15079 . 150 507 GRAS Transcription Factor family AT1G66350 29.973 1.33e-59 204.0
Pslu5g15247 . 2 490 GRAS Transcription Factor family AT5G48150 62.5 0.0 610.0
Pslu5g15715 ACH 1 510 GRAS Transcription Factor family AT3G13840 46.154 3.05e-146 429.0
Pslu5g16447 . 27 529 GRAS Transcription Factor family AT1G14920 48.638 7.08e-162 469.0
Pslu6g00273 . 49 515 GRAS Transcription Factor family AT5G17490 31.6 3.42e-60 204.0
Pslu6g03056 . 13 478 GRAS Transcription Factor family AT1G50420 37.527 1.75e-104 316.0
Pslu6g09812 . 107 507 GRAS Transcription Factor family AT1G66350 41.827 2.11e-99 313.0
Pslu6g15013 . 149 506 GRAS Transcription Factor family AT1G66350 35.509 1.17e-64 218.0
Pslu6g16142 ACH 9 510 GRAS Transcription Factor family AT3G13840 46.805 4.90e-152 444.0
Pslu7g07469 . 1 482 GRAS Transcription Factor family AT1G50420 60.788 0.0 573.0
Pslu7g11277 . 242 651 GRAS Transcription Factor family AT3G54220 80.244 0.0 663.0
Pslu7g11773 . 277 652 GRAS Transcription Factor family AT3G54220 55.409 1.69e-144 427.0
Pslu7g12379 . 4 767 GRAS Transcription Factor family AT1G07530 47.036 0.0 634.0
Pslu7g13232 . 405 713 GRAS Transcription Factor family AT2G37650 52.751 8.50e-99 310.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Pslu GRAS 3e-129 CL0063 TF GRAS