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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g20939 ATGTCAATTATACGGCAAGACAAAACCACACAAATCCTCAAACATGTTCTGTTCCTCCTTATACTTGTTCCGTTTTCGCATTCTCAATCCGTAACAGAATCTTCAATCCACGATCTGCTGAAATCCAAAGGGTTACCGGTTGGTCTGTTCCCGAAAGAAGTCGAATCCTTTACTCTGTACGACACCGGCCTTCTAGAAGTTTTCTTACGTGGACCGTGTCTAACGAAATTCGACACGATGGCGTTTTATGAAAGTACCGTTAGAGCTAATTTAACGTACGGTAGTTTAACTGGCGTTGAAGGGTTATCACAAGAAGAGTTGTTTTTATGGTTGCCGGTTAAAGATATCATCGTTGATGATCCGAAATCTGGACTTATATTGTTCGACATTGGCCTTGCTCATAAGCAGCTGTCGCTTTCGTTGTTTGAAGATCCACCTGATTGTAAATCTGAAGGTGTTTTGAACATGAAGAAGAAATCTAGAAAGGAGATCGGATTTGATGCTCAAATGTAG 513 40.94 MSIIRQDKTTQILKHVLFLLILVPFSHSQSVTESSIHDLLKSKGLPVGLFPKEVESFTLYDTGLLEVFLRGPCLTKFDTMAFYESTVRANLTYGSLTGVEGLSQEELFLWLPVKDIIVDDPKSGLILFDIGLAHKQLSLSLFEDPPDCKSEGVLNMKKKSRKEIGFDAQM 170
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g20939 170 Gene3D - 23 153 IPR036758 -
Pslu1g20939 170 PANTHER T31J12.3 PROTEIN-RELATED 25 149 IPR007493 -
Pslu1g20939 170 SUPERFAMILY At5g01610-like 14 150 IPR036758 -
Pslu1g20939 170 Pfam Protein of unknown function, DUF538 36 143 IPR007493 -
Pslu1g20939 170 FunFam Uncharacterized protein At3g07460 24 152 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g20939 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4374128 Pslu Pslu1g20939 Pslu-Chr1:150830753 Pslu5g04118 Pslu-Chr5:29245359
4478791 Pslu Pslu1g20939 Pslu-Chr1:150830753 Pslu7g12016 Pslu-Chr7:90283903