AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21035 ATGGAGACCCCGGTATCGAAAAGGTTGTTGAGAAAGAAATCTCTGTCGAGAAGCTATGATGAGAATTTGATGGATGATTATTTGGATAAGCAGTTAGGTGCTTCTTCAAGAAAAAGGTTTAAAACAAAGAAAGATTTAGAGAAAGAAACAGAAAAGGAGGCTATGATAGCGCTTTCGTTAGGGTTTCCGATAGACGCGCTTCTTGAAGAAGAAATTAAAGCTAAGGTAGTAAATGAGTTAGATGGAAAAGAACAGAATGATTATATTGTGGTGAGAAATCATATACTTTCGAGGTGGAGGGCTGATGTACAGGTATGGCTTTCTAAAGGACAGATAAGAGAAACTGTAAGTAACGAATACGGCCAGTTGCTGAATTCAGCTTATGATTTTCTTATGCATAACGGGTATATCAATTTTGGGGTTTCACCAGCGTTTAAAGCTCAGATTCCCGAGGAAGCCACTGAGGGGTCTGTGATAATTATCGGTGCGGGACTTGCTGGGTTAGCTGCTGCCCGCCAGCTGTTAGCTTTTGGTTTTAAGGTGGTTGTGGTGGAAGGTAGGAACAGACCCGGGGGAAGAGTTTATACACAAAAGATGGGTCAAAAGGGTAATTATGCTGCGGTAGATCTTGGTGGTAGTGTTATTACAGGCATCCATGCGAACCCTCTTGGGGTTTTGGCTAGACAGCTTTCTATTCCTCTTCATAAAGTGAGAGATGTTTGTCCATTATATGATCCGGAAGGCCAACCTGTTTCTAGTGAAATTGATTCTAAAGTAGAGTTTATTTTTAATAGACTTCTAGACAAAGTTACAGAGTTTAGAAAAATTATGGGTGCATCAGCTGCTGATATTTCTTTAGGATCAGTTCTTGAGAGGCTTAGACAGTTGTATACTGTGGCTAAATGCCCGGAGGAAAAGCAATTACTTGACTGGCATTTTGCAAACTTAGAATATGCGAATGCAGGTTGTCTTTCACATCTTTCTGCTGCCTATTGGGATCAAGATGATCCTTATGAAATGGGTGGTGATCATTGCTTTCTTGCAGGAGGTAATTGGAGGTTAATTGAAGCATTGTGTGACGGGGTTCCCATTTTTTATGGGAAAACCGTCCAAACAGTTCAATATGGTAACGAGGGTGTTGAGGTGACTGCCGGGGATCAAACATATCAAGCTGATATGGTGTTATGCACCGTTCCTCTTGGTGTCCTAAAGAAAAAGACTATAAAATTCATACCCGAATTACCTGTAAGAAAGGTTGAGGCAATTGAGAGACTGGGATTTGGGTTGCTAAATAAGGTAGCTATGGTATTCCCATATGTATTTTGGGGGGAAGAACTTGATACATTTGGTTGCCTTAGCAAAAATAGCGATACACGGGGAGAGTTCTTCTTGTTTTACAGTTATCATACTGTTTCTGGGGGTTCTGGACTCGTTGCATTGGTTGCTGGTGAAGCTGCTAAATCATTTGAGTTCACACCTCCGTCCACTTTACTTCACCGTGTTTTAAGCATCCTTAGAGGAATATATGGTCCAAAGGGTATTGATGTACCTGATCCCATCCAATCAATATGTACGAAATGGGGAAATGATCCTCTTTCTTATGGTTCATACTCTCATGTAAGGGTCCACTCTTCTGGTAGTGATTATGATATACTTGCAGAAAATGTGGAAAACCGGCTTTTCTTTGCTGGTGAAGCCACAACTCGCCAACACCCTGCCACCATGCATGGTGCTTATCTAAGTGGTTTAAGAGAAGCTTCATGCATCTATAGAGTCGCAAAAGGTAGTAAACAAACTCCTCCTAAGAAGAGCCAGCGAAAAATTGTTGGAGTAAGAGACACACTTGTAAATCTGTTCAAGTATCCAGATATAGCTTTTGGGAACTTCAGTATTGTATTTGATCCATCAAATGAAGACCCTAAATCAACGGGCCTTATGATGGTCACTATTGATAGTTCGAGTAGTGAGTTATCTAATGATAACGGGAGGGTCAACAATGGTCAACATTCTGACAAGCAACCTGTGAAGCTTTTTATGATTGTAACACGTCTGCAGGCACAGGAGTTGCAATCGCAGATTGGAGATGGTCAAAGTCGATTGATATATATGTTTAAAAATCACGGGTTGAAGCTTATGGGGTTAGATAGTTTTGCCATCTTAGCTAATACCTTGATTTCTCAAATTGCTGCACGAAGAGGGAGGGTCAGAAATAGGATAGTTCCTGCAAACCGTGTTTCGTACACATGA 2247 40.99 METPVSKRLLRKKSLSRSYDENLMDDYLDKQLGASSRKRFKTKKDLEKETEKEAMIALSLGFPIDALLEEEIKAKVVNELDGKEQNDYIVVRNHILSRWRADVQVWLSKGQIRETVSNEYGQLLNSAYDFLMHNGYINFGVSPAFKAQIPEEATEGSVIIIGAGLAGLAAARQLLAFGFKVVVVEGRNRPGGRVYTQKMGQKGNYAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDVCPLYDPEGQPVSSEIDSKVEFIFNRLLDKVTEFRKIMGASAADISLGSVLERLRQLYTVAKCPEEKQLLDWHFANLEYANAGCLSHLSAAYWDQDDPYEMGGDHCFLAGGNWRLIEALCDGVPIFYGKTVQTVQYGNEGVEVTAGDQTYQADMVLCTVPLGVLKKKTIKFIPELPVRKVEAIERLGFGLLNKVAMVFPYVFWGEELDTFGCLSKNSDTRGEFFLFYSYHTVSGGSGLVALVAGEAAKSFEFTPPSTLLHRVLSILRGIYGPKGIDVPDPIQSICTKWGNDPLSYGSYSHVRVHSSGSDYDILAENVENRLFFAGEATTRQHPATMHGAYLSGLREASCIYRVAKGSKQTPPKKSQRKIVGVRDTLVNLFKYPDIAFGNFSIVFDPSNEDPKSTGLMMVTIDSSSSELSNDNGRVNNGQHSDKQPVKLFMIVTRLQAQELQSQIGDGQSRLIYMFKNHGLKLMGLDSFAILANTLISQIAARRGRVRNRIVPANRVSYT 748
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21035 748 FunFam Lysine-specific histone demethylase 1A 52 152 - -
Pslu1g21035 748 PANTHER FLAVIN MONOAMINE OXIDASE 61 591 IPR050281 GO:0016491(PANTHER)
Pslu1g21035 748 Pfam SWIRM domain 69 139 IPR007526 GO:0005515(InterPro)
Pslu1g21035 748 ProSiteProfiles SWIRM domain profile. 47 148 IPR007526 GO:0005515(InterPro)
Pslu1g21035 748 SUPERFAMILY FAD-linked reductases, C-terminal domain 426 538 - -
Pslu1g21035 748 Gene3D - 240 545 - -
Pslu1g21035 748 Gene3D - 52 151 IPR036388 -
Pslu1g21035 748 Gene3D - 158 587 IPR036188 -
Pslu1g21035 748 SUPERFAMILY FAD-NAD(P)-binding domain 156 591 IPR036188 -
Pslu1g21035 748 SUPERFAMILY Homeodomain-like 49 150 IPR009057 -
Pslu1g21035 748 Pfam Flavin containing amine oxidoreductase 165 589 IPR002937 GO:0016491(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21035 K11450 [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase [EC:1.14.99.66]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:151395383 Pslu3g09431 Pslu-Chr3:69989612 dispersed
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Pslu Amino_oxidase 9.4e-92 CL0063 TR SWI/SNF-SWI3