AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21081 ATGAGAGGAGTGATGGGCAAGTACCCATCAAGTGATGGAAATGGTGAAGTTGGTAGTGGAAATGGGGTTATAAAATACAACAGGAAATGCAGAGATGTTGTGTTTCTTGTTTTTTTCATAGCTTTTTGGATCGCCATGATTGTTAACTCAAGTTTTGGGTTCAACCAAGGAAACCCATTAAGGCTAAACTTTGGGTTGGATTACAAAGGAAATGTATGTGGAGGCAAACACAAAGATTTCAACCTTAAAGAATTGGAACTCAAATATTATGTTAATCCTAACCAAGTTTACCAAAGTGGAGTAAAGAACAGTGGAGTAAAACTATCTAACACCCGAACGATATGCTTGTTGGATTGTCCAATTCCCTCAGAAGATTCTCTGAATTGGGTTTGTGATTATCCAGAAGGAGATATTCGTCTTTCTATGGATGATTGGATCGATATGAATTATGATTATTTTGCTGATCTTACTCCTGAACTGAGAAACACTTCTCTTCAACTTCAAGGTCCTTGTTACCCTGTCATTTTTCCAAGTGTAAATGTTTATTGGACTTGCCAGTTTATCGATCGCCCATCAAATGTGTCTTTAACACATTGGAAGCAAATGAATGGTGTTAACATAGATGATAATATGGTGATCGATAAATCTATTCACAACTCCATTAATGCACGGTCTTCAGTCTTGAAGAGATATGTGGCTGATGTAGGGAAATCATGGCCTGTGTTGATCGTATGTGGAGGACTATTGCCTTTATTTCTATCGTTGTTATGGCTTTTGATGATTCGCCATTTAGTAACCGCAATGCCATGGGTCACTGTATTTTTCTTTAATGGCCTCATTATATCAGTCACAATGTTCTACTACATGAAAGCTGGATGGATTGGAGACAACGCTATCTCGCCCATAATTGGTGAACATGATCCATATTATCATGTTTCTGCAAGGGAACAACATCATATTCGAGTTGCTGCCTTCTTTATGACTTGTGTGATGATTGTTGCTGTTCTATCATCTATAGCTATTGTTCGGCGGATTCTTATGGCAACATCAGTGCTCAAGGTTGCTGCAAAAGTCATTGGAGAAGTTCAGGCTCTTATAATATTCCCAATCGTACCGTACCTTATCCTAGCAATTTTTTACATGTTTTGGTTGTCAGCTGCTCTCCATCTTTTCAGTTCAGGTCAAATTGTCCGCAATGATTGCAGCACAAACTGCTGTGCATATGATCTCAAAGCTAAACGGGTCAGTTGTGATGATTGCTGTGGTTATAGCATCCATTACACCCCTCATATCGCAGCTTCAATCCTGTTCCACTTGTTTGGATGCTATTGGGCCACTCAGTTTTTCATAGCATGTTCGTCAACTGTCATTGCTGGTTCTGTAGCTTCCTACTATTGGGCTCGTGGGGAAACTTCGGCAACTATTCCATTTCTTCCAGTTTTTTCGTCAATGAAGCTACTCATGCGTTATAGCCTTGGCTCAGTGGCAATAGGTTCTTTGATCGTATCTTTTGTTGAGTCAACTCGGTTCATACTTGAGGCCATACGCCGGAGATTAAAAGTTGCTGATATTTTGCCTGAAAGCTGGATCAAAAGGATGATGTTCTATACTTCTCGTTTTTGCTTGAGGTGTATTGAATTGACCATAAAATCCGTAAACCGAAATGCATACATTATGATTGCTGTAACAGGAAAAGGGTTTTTTAGAGCTTCTGAAATGGCAACTGATTTGATAATCAGGAATATTCTTCGTATAGGCAAAGTGAATGTGATTGGGGATGTTATTCTGTTTCTTGGAAAACTGTGTGTGAGTCTTGCTAGTGCTCTTTTCGCATTTTTAATGCTGGATACTCATAAATACAAATCATCCCACAACAAGATCACATCCCCATTACTTCCCGTGCTGATGTGCTGGGGTCTAGGATATGTAGTGGCTACGCTTTTCTTTGGAGTAGTTGAGATGTCGATAGATACTATCATCCTTTCGTATTGTCAAGATGCTGAAGAACATCAAGGGACTGCACATTATGCTCCTCCACTTTTGATCGAAACTTTTGATGATCGAAATGAGGTGCAAAGAATTGCACAATGA 2091 39.41 MRGVMGKYPSSDGNGEVGSGNGVIKYNRKCRDVVFLVFFIAFWIAMIVNSSFGFNQGNPLRLNFGLDYKGNVCGGKHKDFNLKELELKYYVNPNQVYQSGVKNSGVKLSNTRTICLLDCPIPSEDSLNWVCDYPEGDIRLSMDDWIDMNYDYFADLTPELRNTSLQLQGPCYPVIFPSVNVYWTCQFIDRPSNVSLTHWKQMNGVNIDDNMVIDKSIHNSINARSSVLKRYVADVGKSWPVLIVCGGLLPLFLSLLWLLMIRHLVTAMPWVTVFFFNGLIISVTMFYYMKAGWIGDNAISPIIGEHDPYYHVSAREQHHIRVAAFFMTCVMIVAVLSSIAIVRRILMATSVLKVAAKVIGEVQALIIFPIVPYLILAIFYMFWLSAALHLFSSGQIVRNDCSTNCCAYDLKAKRVSCDDCCGYSIHYTPHIAASILFHLFGCYWATQFFIACSSTVIAGSVASYYWARGETSATIPFLPVFSSMKLLMRYSLGSVAIGSLIVSFVESTRFILEAIRRRLKVADILPESWIKRMMFYTSRFCLRCIELTIKSVNRNAYIMIAVTGKGFFRASEMATDLIIRNILRIGKVNVIGDVILFLGKLCVSLASALFAFLMLDTHKYKSSHNKITSPLLPVLMCWGLGYVVATLFFGVVEMSIDTIILSYCQDAEEHQGTAHYAPPLLIETFDDRNEVQRIAQ 696
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21081 696 Pfam Plasma-membrane choline transporter 326 668 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Pslu1g21081 696 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 23 684 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21081 K15377 solute carrier family 44 (choline transporter-like protein), member 2/4/5
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:32376935 Pslu1g21081 Pslu-Chr1:151664286 dispersed