AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pslu1g21160 | ATGGGCGGTTGTGGGTGGTTTAAGAGGTTAGTTGGCATTAAAAGAAAGAAGGAAAACAGACCCAACAAGATAGAGATACAGCAGGATTCCAGGATTGCAAACAGCTCAAAAGGCCGGGATTCTTCTGTGAGAGATTCAAGTTTTCGTGCTGGCAGTAGAAAAGTTATTGGTCGCAGCACAGGAACAAAGGAATTTGCTGCAACTCGAATCCAAACTGCATATCGATCATATAGGGCAAGAAAAAAGCTACGTTGTCTGAAAGGGACTGCAAGATTTCAGGTGTTGGTTGAGGCTGATGCTCTTACAAGGCAAGCTTCTTCTGCTCTTAACACAATACATTTGTGGGGCAAAATACAAACTGAAATCAGAAGCCGACGTCACTGGATGGTGGCAGAAGGTCGGATAAAGCAAAAGAGGCTTGAAAATCAAGTGAAAATTGAGTCTAAGCTTCATGAACTTGAGGTCGAATGGTGTGGTGGACCCGAGACGATGGATGACATCGTGTCCAGGATACAACAGCGTGAGGAGGCCACCATCAAGCGTGAACGAGCAATGGCTTATGCCTTCTATCACCAATGGAGGGCGAACTCAAATCGGTATTATGGTCAAGCTTATTATGATCTAAGCAAAGAGAGTTGGGGGTGGAGTTGGAAGGAGCGTTGGATTGCAGTGTGCCCATGGGAGGCTCGGGTGGTTGCACGTTCAAAGCCAGGTAAAAAGACAAAGCATGTTGCACCAAAGATACTCGTTGCAGTGAAACCCCAAACGACTAATGGAAAAGGCACAATCAAAGCGGCGTATGGTACTTCCTGA | 813 | 46.0 | MGGCGWFKRLVGIKRKKENRPNKIEIQQDSRIANSSKGRDSSVRDSSFRAGSRKVIGRSTGTKEFAATRIQTAYRSYRARKKLRCLKGTARFQVLVEADALTRQASSALNTIHLWGKIQTEIRSRRHWMVAEGRIKQKRLENQVKIESKLHELEVEWCGGPETMDDIVSRIQQREEATIKRERAMAYAFYHQWRANSNRYYGQAYYDLSKESWGWSWKERWIAVCPWEARVVARSKPGKKTKHVAPKILVAVKPQTTNGKGTIKAAYGTS | 270 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pslu1g21160 | 270 | PANTHER | IQ-DOMAIN 5-RELATED | 6 | 239 | - | - | |
| Pslu1g21160 | 270 | MobiDBLite | consensus disorder prediction | 30 | 52 | - | - | |
| Pslu1g21160 | 270 | ProSiteProfiles | IQ motif profile. | 63 | 91 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pslu1g21160 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 134901 | Pslu1g21160 | Pslu5g15421 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Pslu | Pslu-Chr1:152145362 | Pslu3g13730 | Pslu-Chr3:100318656 | dispersed | |
| Pslu | Pslu-Chr4:43383664 | Pslu1g21160 | Pslu-Chr1:152145362 | transposed | |
| Pslu | Pslu-Chr7:78020158 | Pslu1g21160 | Pslu-Chr1:152145362 | transposed | |
| Pslu | Pslu-Chr1:152145362 | Pslu5g15421 | Pslu-Chr5:112479063 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Pslu1g00927 | . | 206 | 794 | IQD Protein family | AT1G19870 | 36.493 | 2.83e-85 | 283.0 | |
| Pslu1g00978 | . | 697 | 794 | IQD Protein family | AT1G19870 | 49.091 | 3.86e-21 | 87.0 | |
| Pslu1g02052 | . | 1 | 416 | IQD Protein family | AT2G26180 | 58.744 | 9.39e-146 | 420.0 | |
| Pslu1g02364 | . | 62 | 481 | IQD Protein family | AT4G23060 | 43.021 | 3.14e-62 | 206.0 | |
| Pslu1g03100 | ACH | 1 | 449 | IQD Protein family | AT5G03040 | 48.132 | 2.24e-109 | 327.0 | |
| Pslu1g04434 | . | 151 | 517 | IQD Protein family | AT3G59690 | 46.835 | 4.99e-98 | 305.0 | |
| Pslu1g05809 | . | 1 | 534 | IQD Protein family | AT4G00820 | 54.641 | 3.98e-157 | 457.0 | |
| Pslu1g07818 | ACH | 1 | 374 | IQD Protein family | AT4G14750 | 48.02 | 1.42e-89 | 273.0 | |
| Pslu1g10787 | . | 1 | 353 | IQD Protein family | AT3G16490 | 46.216 | 1.58e-56 | 187.0 | |
| Pslu1g12502 | . | 1 | 159 | IQD Protein family | AT5G03960 | 43.75 | 6.67e-20 | 87.8 | |
| Pslu1g21160 | ACH | 2 | 240 | IQD Protein family | AT3G15050 | 50.391 | 1.28e-80 | 242.0 | |
| Pslu1g21605 | . | 1 | 408 | IQD Protein family | AT5G35670 | 41.943 | 1.99e-83 | 259.0 | |
| Pslu2g02330 | ACH | 1 | 575 | IQD Protein family | AT1G74690 | 37.288 | 5.11e-73 | 241.0 | |
| Pslu2g16895 | . | 11 | 534 | IQD Protein family | AT4G00820 | 44.964 | 1.28e-111 | 339.0 | |
| Pslu3g04450 | . | 1 | 794 | IQD Protein family | AT1G19870 | 35.275 | 1.82e-107 | 346.0 | |
| Pslu3g10390 | . | 107 | 451 | IQD Protein family | AT5G03040 | 45.479 | 1.02e-81 | 259.0 | |
| Pslu3g12697 | ACH | 45 | 332 | IQD Protein family | AT5G07240 | 44.615 | 2.02e-43 | 153.0 | |
| Pslu3g13730 | . | 1 | 386 | IQD Protein family | AT3G22190 | 56.265 | 4.34e-120 | 353.0 | |
| Pslu3g13765 | . | 1 | 376 | IQD Protein family | AT3G22190 | 56.589 | 1.68e-114 | 345.0 | |
| Pslu3g14582 | . | 1 | 480 | IQD Protein family | AT4G23060 | 36.105 | 1.53e-50 | 175.0 | |
| Pslu3g17665 | ACH | 1 | 378 | IQD Protein family | AT4G14750 | 45.926 | 2.55e-82 | 254.0 | |
| Pslu4g00194 | ACH | 3 | 340 | IQD Protein family | AT5G62070 | 38.843 | 4.71e-45 | 157.0 | |
| Pslu4g00283 | . | 71 | 435 | IQD Protein family | AT5G03040 | 43.514 | 4.45e-74 | 248.0 | |
| Pslu4g00901 | ACH | 1 | 421 | IQD Protein family | AT3G52290 | 50.769 | 2.52e-112 | 335.0 | |
| Pslu4g01313 | ACH | 1 | 455 | IQD Protein family | AT5G03040 | 55.106 | 3.57e-152 | 439.0 | |
| Pslu4g01911 | ACH | 1 | 576 | IQD Protein family | AT1G74690 | 40.436 | 4.25e-90 | 286.0 | |
| Pslu4g04261 | . | 1 | 406 | IQD Protein family | AT5G13460 | 46.747 | 1.24e-100 | 304.0 | |
| Pslu4g06512 | . | 1 | 217 | IQD Protein family | AT3G15050 | 49.561 | 2.36e-65 | 204.0 | |
| Pslu5g15421 | ACH | 61 | 241 | IQD Protein family | AT3G15050 | 49.474 | 4.08e-62 | 193.0 | |
| Pslu5g15646 | ACH | 1 | 353 | IQD Protein family | AT3G16490 | 53.401 | 1.86e-97 | 294.0 | |
| Pslu5g16602 | . | 1 | 341 | IQD Protein family | AT3G16490 | 38.611 | 4.44e-40 | 144.0 | |
| Pslu6g00114 | . | 1 | 307 | IQD Protein family | AT4G14750 | 36.533 | 4.22e-38 | 139.0 | |
| Pslu6g00673 | ACH | 1 | 292 | IQD Protein family | AT3G52290 | 41.534 | 1.86e-55 | 185.0 | |
| Pslu6g08949 | . | 35 | 100 | IQD Protein family | AT3G51380 | 68.182 | 2.26e-25 | 92.4 | |
| Pslu6g15861 | ACH | 1 | 353 | IQD Protein family | AT3G16490 | 50.376 | 2.76e-89 | 273.0 | |
| Pslu6g16095 | . | 1 | 414 | IQD Protein family | AT1G72670 | 41.632 | 1.34e-82 | 258.0 | |
| Pslu7g01247 | ACH | 1 | 450 | IQD Protein family | AT5G03040 | 49.451 | 4.77e-133 | 389.0 | |
| Pslu7g09997 | . | 1 | 517 | IQD Protein family | AT3G59690 | 48.592 | 2.79e-145 | 426.0 | |
| Pslu7g10241 | . | 1 | 263 | IQD Protein family | AT2G33990 | 46.931 | 2.80e-69 | 214.0 | |
| Pslu7g12955 | . | 1 | 444 | IQD Protein family | AT3G49260 | 44.518 | 1.43e-94 | 291.0 |