AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21186 ATGGCTAATAGGAATTTGGAGAAATTGGCATCTATTGATGCTCAGTTGAGGCTTTTAGTTCCTGGAAAAGTTTCTGAAGATGATAAACTTATTGAATATGATGCCTTGCTTTTAGATAAATTTCTTGACATCCTTCAGGATTTACATGGTGAAGATCTTAAAGAAACGGTTCAAGAATGCTATGAGCTATCTGCTGAATATGAAGGAAAGCGTGATCCAAAAAAGCTTGAAGAGCTTGGAAATGTGCTAACAAGTTTGGATCCAGGGGATTCAATTGTGATTGCAAAAGCTTTTTCTCACATGCTTAACTTGGCGAATCTGGCTGAAGAGGTTCAGATTGCTTACCGTCGTAGGATCAAGTTGAAGAAGGGTGATTTTGCTGATGAAGCTAATGCAACAACTGAATCTGATATTGAGGAAACTTTTAAGAAACTTGTGCATCAGCTTAAGAAATCCCCTGAAGAGGTTTTTGATGCACTTAAGAATCAAACAGTTGATTTGGTTTTGACTGCTCATCCGACTCAATCCGTCCGTAGATCTTTGCTTCAGAAGCATGGAAGGATTCGTGACTGTCTGGCCCAGTTGTATGCCAAAGATATCACTCCTGATGACAAGCAGGAACTGGATGAGGCTCTGCACAGAGAAATTCAAGCTGCTTTCCGTACAGATGAGATTAAGAGGACTCCTCCAACCCCACAAGATGAAATGAGAGCTGGAATGAGTTACTTTCATGAAACAATCTGGAAGGGGGTTCCTAAATTCTTACGCCGTGTTGATACTGCTCTTAAGAATATTGGGATCAATGAACGTGTTCCATACAGTTCCCCTCTTATTCAATTCTCTTCCTGGATGGGTGGTGATCGTGACGGCAATCCAAGGGTAACTCCTGAGGTAACCAGGGATGTTTGCTTACTTGCCCGAATGATGGCCGCAAACATGTACTTTTCGCAGATTGAGGATCTAATGTTTGAGATGTCCATGTGGCGTTGTACTGACGAACTTCGTGTTCGAGCAGAAGAAATCTATAGAACAGATAAGAGAGATGTGAAGCACTACATTGAGTTCTGGAAGCAGGTCCCTCCAACCGAACCTTATCGTGTGATTCTTGGAGATGTAAGGGACAAGTTATATAATACACGTGAACGATCTCGGCATCTACTAGCCCATGAGAAATCTGACATTCCAGAAGACTTGGTCTATACAAATGTTGAACAATTCTTGGAACCTCTTGAGCTATGCTACCGATCTCTATGTGCTTGTGGTGACCGTGTGATTGCTGATGGAAGCCTTCTTGATTTTCTAAGACAAGTATCCACATTTGGACTCTCGCTTGTAAAACTCGATATAAGGCAAGAATCTGACCGCCACACGGACGTCCTCGATGCCATCACTCAACATTTGGAAATTGGGTCTTATCGTGAGTGGTCAGAGGAGAAACGCCAAGAATGGCTTCTGGCCGAGCTCCGTGGAAAACGACCTCTTTTTGGTGATGATCTCCCCAAAACCGAGGAAATTAAGGATGTTTTGGATACATTCGGTGTACTTGCGGAACTCCCATCCGATTGTTTTGGTGCTTACATCATTTCAATGGCTACATCATCTTCAGATGTTCTCGCTGTCGAGCTGCTTCAACGTGAATGCCATGTAAAAAAACCTTTACGTGTGGTCCCACTGTTTGAGAAACTTGCAGATCTTGAGGCGGCTCCAGCTGCCATGGCTCGCCTTTTCTCAATCGACTGGTACACAAACCGGATCAACGGAAAGCAAGAAGTCATGATTGGGTACTCTGATTCAGGAAAAGATGCTGGAAGGTTTACTGCTGCATGGCAGCTTTACAAGGCTCAAGAAGAGCTTATCAAGGTTGCAAAGGAGTTCGGAATTAAGCTTGTCATGTTCCATGGACGTGGTGGAACTGTCGGTAGAGGAGGTGGCCCCACCCATCTTGCTATCCTGTCTCAGCCACCAGAGACCATTCATGGGTCTCTAAGAGTCACGGTTCAGGGAGAGGTCATAGAACAATCGTTCGGTGAGGAACATTTGTGCTTTAGAACACTTCAAAGGTTTTGTGCTGCTACCCTTGAGCATGGTATGAATCCCCCAATCTCACCACGACCCGAGTGGCGTGAACTAATGGATGAGATAGCGGTTCTTGCAACTGAGCAGTATCGTTCTATTGTGTTCCAGGAACCACGTTTTGTGGAGTATTTCCGCCTCGCCACACCAGAACTGGAGTATGGACGTATGAATATTGGAAGTCGCCCAGCAAAAAGAAAACCAAGTGGAGGCATAGAATCACTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACCAGGTTCCATCTCCCGGTTTGGCTTGGGTTCGGGGCAGCATTCAAGCATGCCATCACGAAGGACAGCAAGAATCTTCAAATGCTACAAGAAATGTACAAAACCTGGCCTTTTTTTAGGGTGACCATTGATTTAGTTGAAATGGTGTTTGCCAAAGGTGACCCAGGAATTGCTGCTCTGAATGACAAGCTCCTTGTCTCTGAAGATCTATGGTCGTTTGGAGAATCGTTGAGGGCAAACTACGAAGAAACAAAGGATTATCTTCTCAAGATTGCTGGACATAAGGACCTTCTCGAGGGCGATCCCTACTTGAAGCAGAGACTTCGTCTGCGTGATTCATACATCACAACCTTGAATGTGTGCCAAGCTTACACCCTAAAACGGATCCGTGATCCAAACTATCACGTGACTTTGAGGCCACATATTTCCAAAGAGTATGCCGAGCCAAGCAAACCAGCTGATGAACTGATCCACCTGAACAAGACAAGCGAGTACGCTCCAGGTTTGGAGGACACTCTCATCCTGACCATGAAGGGTATTGCTGCTGGTATGCAGAACACTGGTTAA 2898 44.76 MANRNLEKLASIDAQLRLLVPGKVSEDDKLIEYDALLLDKFLDILQDLHGEDLKETVQECYELSAEYEGKRDPKKLEELGNVLTSLDPGDSIVIAKAFSHMLNLANLAEEVQIAYRRRIKLKKGDFADEANATTESDIEETFKKLVHQLKKSPEEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRDCLAQLYAKDITPDDKQELDEALHREIQAAFRTDEIKRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYSSPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANMYFSQIEDLMFEMSMWRCTDELRVRAEEIYRTDKRDVKHYIEFWKQVPPTEPYRVILGDVRDKLYNTRERSRHLLAHEKSDIPEDLVYTNVEQFLEPLELCYRSLCACGDRVIADGSLLDFLRQVSTFGLSLVKLDIRQESDRHTDVLDAITQHLEIGSYREWSEEKRQEWLLAELRGKRPLFGDDLPKTEEIKDVLDTFGVLAELPSDCFGAYIISMATSSSDVLAVELLQRECHVKKPLRVVPLFEKLADLEAAPAAMARLFSIDWYTNRINGKQEVMIGYSDSGKDAGRFTAAWQLYKAQEELIKVAKEFGIKLVMFHGRGGTVGRGGGPTHLAILSQPPETIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPEWRELMDEIAVLATEQYRSIVFQEPRFVEYFRLATPELEYGRMNIGSRPAKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHAITKDSKNLQMLQEMYKTWPFFRVTIDLVEMVFAKGDPGIAALNDKLLVSEDLWSFGESLRANYEETKDYLLKIAGHKDLLEGDPYLKQRLRLRDSYITTLNVCQAYTLKRIRDPNYHVTLRPHISKEYAEPSKPADELIHLNKTSEYAPGLEDTLILTMKGIAAGMQNTG 965
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21186 965 Hamap Phosphoenolpyruvate carboxylase [ppc]. 23 965 IPR022805 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Pslu1g21186 965 SUPERFAMILY Phosphoenolpyruvate-pyruvate domain 33 965 IPR015813 GO:0003824(InterPro)
Pslu1g21186 965 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 27 965 IPR021135 GO:0005829(PANTHER)|GO:0006099(InterPro)|GO:0008964(PANTHER)|GO:0008964(InterPro)|GO:0009507(PANTHER)|GO:0015977(InterPro)|GO:0048046(PANTHER)|GO:0048366(PANTHER)
Pslu1g21186 965 Pfam Phosphoenolpyruvate carboxylase 34 965 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Pslu1g21186 965 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 168 179 IPR018129 -
Pslu1g21186 965 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 591 603 IPR033129 -
Pslu1g21186 965 Gene3D Phosphoenolpyruvate-pyruvate domain 308 443 - -
Pslu1g21186 965 PRINTS Phosphoenolpyruvate carboxylase signature 440 460 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Pslu1g21186 965 PRINTS Phosphoenolpyruvate carboxylase signature 167 180 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Pslu1g21186 965 PRINTS Phosphoenolpyruvate carboxylase signature 280 295 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Pslu1g21186 965 PRINTS Phosphoenolpyruvate carboxylase signature 631 660 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Pslu1g21186 965 PRINTS Phosphoenolpyruvate carboxylase signature 220 236 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Pslu1g21186 965 PRINTS Phosphoenolpyruvate carboxylase signature 763 789 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Pslu1g21186 965 PRINTS Phosphoenolpyruvate carboxylase signature 589 609 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Pslu1g21186 965 FunFam Phosphoenolpyruvate carboxylase 1 308 443 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21186 K01595 phosphoenolpyruvate carboxylase [EC:4.1.1.31]
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Event-related genes

Select Gene_1 Gene_2 Event_name
134913 Pslu1g21186 Pslu3g16322
134914 Pslu1g21186 Pslu5g15400
134915 Pslu1g21186 Pslu5g15401
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:152366879 Pslu5g15401 Pslu-Chr5:112359866 dispersed
Pslu Pslu-Chr5:104673722 Pslu1g21186 Pslu-Chr1:152366879 transposed
Pslu Pslu-Chr1:152366879 Pslu3g16322 Pslu-Chr3:117075782 wgd
Pslu Pslu-Chr1:152366879 Pslu5g15400 Pslu-Chr5:112359218 wgd