AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21191 ATGACTTCTTTCCTTGTATTCTTACTCTGTTTTCAAGTTTTTTCATCCATCTCAGAAGCTGTTGTGCCTGCTTCAGACACATTCAAGTACGTAAACGAAGGCGACTTCGGTGACTATATCGTTGAATACGATGCAAATTATCGTGCACTCTCCCCTTTTAACAGCCCATTCCAGCTTTGTTTCTACAACACCACTCCAAATGCATTCACTCTAGCTCTACGTATGGGTACGGTTCGATCAGAATCACTCATGCGTTGGGTTTGGGAAGCTAATCGTGGGAGCCCGGTTCGTGAAAATGCAACCCTCACATTCGGCTCAGACGGGAACCTTGTCCTGGCTGATGCTGACGGTAGGGTTGTCTGGCAAACCAACACCGCCAACAAAGGCGTTGTTGGTTTTCAGGTACTTCCCACTGGCAACATGGTTCTTCACGATGGGAAGGGTAATTTTATATGGCAAAGTTTTGATTCACCAACTGATACTCTTTTGGTTGGTCAATCTCTTCGAGCTGGAGGTGTGAGTAAGCTCGTGAGTCGAGCTTCAACCCAAAACAACATTGATGGAGCGTATAGTTTGGCGATGGAGCCCAAAGGGTTATCTATGTATTACAAGAGTCCTAACTCGCCGCGCGGGTTGTTGTATTGGTCGTCTAGCGAATGGTTCACTATTGACAAGGGTAGTTTGACCAATCTGACTCTTACTTCCGTCCCAGACACCGATGAAGGGTTTCTCTATTACTTGACATTCGATTACTTTGTCACGAACCCATCATCGAATTCAGGTCGAAACATGGCTTATTCAAAGTATAACAACACATTATCGTACCTTCGATTGGGAATCGACGGAAACCTTAAATTCTTTACATATAACCCTAATACACAAGGTGTTGCGTGGGAAAATGTGTACACATTTCTCGATAGGGATTCGATGGAAGGCGAGTGTCAATTACCCGAGCGATGTGGGAAGTTCGGGCTATGTGAAGACAGCCAATGTGTGGCGTGCCCGACCCCTACTGGTCTAAGTGGGTGGAGTAAAGATTGTGATGTAAAGAAGGTGACATCTTGTAAAGCTAGTGACTTTGGGTACTATAAGCTTGAAGGTGTTGATCATTTTATGATCAAGTACACCAGGGGAGATGGGTCAACGAAACAAAGCGATTGCGAGAGCAAATGCACAAAGGATTGCAAGTGCATGGGGTATTTCTATCACACGGATCAATCGAGATGCTGGATTGCTTACGATTTGAAGACGTTAACGAGAGCAGGGAACTCGACTCATTTGGCATATATCAAAACACCCAACAAGTAG 1308 44.95 MTSFLVFLLCFQVFSSISEAVVPASDTFKYVNEGDFGDYIVEYDANYRALSPFNSPFQLCFYNTTPNAFTLALRMGTVRSESLMRWVWEANRGSPVRENATLTFGSDGNLVLADADGRVVWQTNTANKGVVGFQVLPTGNMVLHDGKGNFIWQSFDSPTDTLLVGQSLRAGGVSKLVSRASTQNNIDGAYSLAMEPKGLSMYYKSPNSPRGLLYWSSSEWFTIDKGSLTNLTLTSVPDTDEGFLYYLTFDYFVTNPSSNSGRNMAYSKYNNTLSYLRLGIDGNLKFFTYNPNTQGVAWENVYTFLDRDSMEGECQLPERCGKFGLCEDSQCVACPTPTGLSGWSKDCDVKKVTSCKASDFGYYKLEGVDHFMIKYTRGDGSTKQSDCESKCTKDCKCMGYFYHTDQSRCWIAYDLKTLTRAGNSTHLAYIKTPNK 435
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21191 435 CDD PAN-AP-plant 354 433 - -
Pslu1g21191 435 Gene3D - 26 156 IPR036426 -
Pslu1g21191 435 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 45 433 IPR051343 -
Pslu1g21191 435 Pfam D-mannose binding lectin 87 170 IPR001480 -
Pslu1g21191 435 PIRSF SLG 1 435 IPR035446 -
Pslu1g21191 435 Pfam S-locus glycoprotein domain 226 339 IPR000858 GO:0048544(InterPro)
Pslu1g21191 435 SMART blect-4 41 158 IPR001480 -
Pslu1g21191 435 CDD B-lectin 41 158 IPR001480 -
Pslu1g21191 435 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 216 IPR036426 -
Pslu1g21191 435 FunFam Os04g0303100 protein 77 210 - -
Pslu1g21191 435 ProSiteProfiles Bulb-type lectin domain profile. 25 156 IPR001480 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21191 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:152424262 Pslu1g21199 Pslu-Chr1:152459220 dispersed
Pslu Pslu-Chr1:152424262 Pslu1g21194 Pslu-Chr1:152436440 proximal