AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21202 ATGACTAGTACTTCATCTCTTCTACTTATCTTTTTATGCTTCTTTTTCCGATCATTCTTCATCTCCGACGCCGTTGTTCCTCTCAACGAGACCTTCACGTATGTGAATGAAGGCGAATTCGGAGAGTTCGTGCCTGAATACAACCCAACTTACCGGTTTCTTCCGGCATTCACCTCCCCTTTCCAACTTTGTTTCTACAACACCACCCCAAATGCGTACACTCTTGCTCTCCGAATGGGGACCACACGTACAAATTCCGTGATGGTATGGGTCTGGGAAGCGAACCGGGGAAAACCGGTTCGCGAAAACGCTACATTCTCACTCGGCCAGGATGGAAACCTCGTACTGGCCGAGTCGGACGGGCGTATTGTATGGCAAACTAACACCACCAATAAAGGCGTTGTTGGTTTCGAGATACTTCCAACCGGTAACATGGTCCTTCGTAACTCAAAGGGAAAGTTCATTTGGCAAAGTTTCGATACCCCAACCGATACTTTGCTAATTAGCCAATCTCTCCGGGTCAAAGGTGGTCCGTATAAGCTCGTAAGTAGGGATTCAATCACAAACAATGTTAACGGGGTTTATAGTTTCGTAGTTGAGCCTAAAAGATTGGCTTTGTATTACAAGAACACCATGCTTTACTGGTCGTCCTCATTTACAAATTTAAACCGAAAAAACGTGAGTATTGTCGATGCTACACTACGAATAGTTGAAACCGAATATGAAGAAAACAATTTCAACGCACTTTATTGTAGTGTCACGAATGCTGAAGCTTGGGAAAACCCTTACATAGATATGGGGACGATTCGATACAATAGCTCGTTATCGTATCTAAGATTAGGCATTGATGGGAACTTAAGGTTATACACGTATCGAGCAGATGTGCACGGAAACGCGTGGGGCCTGTTGTTCACTTTGTTCGATAGAAGGGTTAGCCAGGTGGATGAGACAGGGACCGGAGAGGTTGCTGAAAGCGAGTGCCAATTACCGAATCGGTGCGGGAAGTTTGGGCTTTGTGCGGACAACCAATGTGTCGGGTGCCCGACGCCAGTCGCGGTATATGAGTGGAGCCAAGATTGTAAATCTAGGTTGCCGGGTTGTAACGCGAGTGATTTTAGTTACTATGTGCTTAAAGGAGTTGACCATTTTACGGTTAAGTATACACCCGGGGCGGGCCCCGTGAAGCGGAGAGACTGTGAGAGCAAATGTACTAAGGATTGTAAGTGCTTGGCGTATTTTTATCGTACGGATCTGTCGAGATGTTGGTTCGCGACCGAGTTGAAGACATTGACACGAGTTGGGAACTCGACACACTTGGCGTACATCAAAACACCTATAATTAGGTAG 1347 46.1 MTSTSSLLLIFLCFFFRSFFISDAVVPLNETFTYVNEGEFGEFVPEYNPTYRFLPAFTSPFQLCFYNTTPNAYTLALRMGTTRTNSVMVWVWEANRGKPVRENATFSLGQDGNLVLAESDGRIVWQTNTTNKGVVGFEILPTGNMVLRNSKGKFIWQSFDTPTDTLLISQSLRVKGGPYKLVSRDSITNNVNGVYSFVVEPKRLALYYKNTMLYWSSSFTNLNRKNVSIVDATLRIVETEYEENNFNALYCSVTNAEAWENPYIDMGTIRYNSSLSYLRLGIDGNLRLYTYRADVHGNAWGLLFTLFDRRVSQVDETGTGEVAESECQLPNRCGKFGLCADNQCVGCPTPVAVYEWSQDCKSRLPGCNASDFSYYVLKGVDHFTVKYTPGAGPVKRRDCESKCTKDCKCLAYFYRTDLSRCWFATELKTLTRVGNSTHLAYIKTPIIR 448
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21202 448 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 58 444 IPR051343 -
Pslu1g21202 448 SMART blect-4 45 162 IPR001480 -
Pslu1g21202 448 CDD B-lectin 46 162 IPR001480 -
Pslu1g21202 448 Gene3D - 50 160 IPR036426 -
Pslu1g21202 448 PIRSF SLG 1 447 IPR035446 -
Pslu1g21202 448 Pfam D-mannose binding lectin 91 174 IPR001480 -
Pslu1g21202 448 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 216 IPR036426 -
Pslu1g21202 448 ProSiteProfiles Bulb-type lectin domain profile. 29 160 IPR001480 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21202 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:152459220 Pslu1g21202 Pslu-Chr1:152470862 dispersed
Pslu Pslu-Chr1:152470862 Pslu1g02715 Pslu-Chr1:18136266 dispersed
Pslu Pslu-Chr1:152462070 Pslu1g21202 Pslu-Chr1:152470862 proximal