AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21232 ATGAATGCTTCTGTTATTTACCTATTTTTTTCAACTATTATCTCCATTTACATCTTTCAGTTTCAAGCTCAAGCGGCACCTGCAGCTGCTCCGGTGATTAAGCAATTATCTTCCATTCTCAAGTGGACAGCTAGGTCATCTTCTAAATCACCATTATCAGATGGGAATATTCTTCAATTTGAAGATGGTTATTTAGTAGAAACAGTAGTGGAAGGGAATCAGCTAGGTGTTGTGCCTTATTCCATTCGAGTTTCGCAGGAAGGCGAACTTTACGCTGTTGATTCCGTCAATAGCAACATTGTTCGAATTACGCCCCCTTTATCTCAATATAGTCGGGCAAGATTAATTGCGGGGTCCTTCCAGGGTTATACTGGTCATGTTGATGGAAAATCAAATGATGCTCGTTTTGATCATCCTAAAGGTGTTACGATGGATGATAAAGGAAATGTTTATGTTGCTGATACCTCTAATCTCGCCATTAGAAAGATCGGAGAAACAGGTGTGACGACAATTGCTGGAGGAAAATCAAATGTAGCAGGGTATAGGGATGGACCGAGTGAGGATGCACAGTTTTCAAATGATTTTGATGTAATTTATGTGAGGCCAACATGTTCGTTATTAGTTATTGATCGAGGAAATGCTGCTCTTCGACAAATTTCACTAAATCAAGAGGATTGTGATTACCATGACAGCTCTGTCTCTTCCATAGATCTCGTTTTGGTAATTGGTGCCATCTTGATAGGATATGTTGTATGCATGATTCAACAAGGATATGGTTCGTCATATTTCACCAATGTGGAAAAGGTAGAGAGTGATACTAAAAGACCAGGCAAAGAAAAACCCACAAAAACTCAAACTGTGGAGACTGTTAGAGAAGAACAAGAAGCAGGATGGCCATCTTTTGGTCAACTTGTTATGGATCTATCAAAACTCGCCCTCGAAGGCTTCGGTAACATCTTTGTTTCTTTCAACCCGTTCATAAGCTCTAAAAGGGGTCTCACCCCATTAAAAGATCATCTTATAATGCCTGAAGACGAGCCAGCTCATCAGCCTGCATTGGTACAAAAGCACAGAACCCCAACCCCTCTTTCAGAAACCCGTCATGCTCACAATCCAAACGAAAAACACCCGGAAACAAAACCTGCTAAGGTAAGATCATCTAGCTTAAAAGATCCAACCAAGCACAGAGTCCCAAAAAGAGAAGAATATGCAGAGTTTTATGGGGGGGCTAGTGGTGAGGTTCCTCATGTTCGATCCAAGAGCCAAAAAGAAAGACCAAAGCATCGACCCAGAGATAAGCGAGGTGAAGTTGTATATTCAGGCGAACAAAAACCCGTTGACCTAAAACCGGTCAACTATGATGACCCCAAGTTTAGCTATATGAGAAACAAGTATGGAGATTCATATCGTTTCAATTAA 1419 40.87 MNASVIYLFFSTIISIYIFQFQAQAAPAAAPVIKQLSSILKWTARSSSKSPLSDGNILQFEDGYLVETVVEGNQLGVVPYSIRVSQEGELYAVDSVNSNIVRITPPLSQYSRARLIAGSFQGYTGHVDGKSNDARFDHPKGVTMDDKGNVYVADTSNLAIRKIGETGVTTIAGGKSNVAGYRDGPSEDAQFSNDFDVIYVRPTCSLLVIDRGNAALRQISLNQEDCDYHDSSVSSIDLVLVIGAILIGYVVCMIQQGYGSSYFTNVEKVESDTKRPGKEKPTKTQTVETVREEQEAGWPSFGQLVMDLSKLALEGFGNIFVSFNPFISSKRGLTPLKDHLIMPEDEPAHQPALVQKHRTPTPLSETRHAHNPNEKHPETKPAKVRSSSLKDPTKHRVPKREEYAEFYGGASGEVPHVRSKSQKERPKHRPRDKRGEVVYSGEQKPVDLKPVNYDDPKFSYMRNKYGDSYRFN 472
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21232 472 MobiDBLite consensus disorder prediction 271 293 - -
Pslu1g21232 472 MobiDBLite consensus disorder prediction 361 403 - -
Pslu1g21232 472 SUPERFAMILY NHL repeat 72 219 - -
Pslu1g21232 472 PANTHER - 20 467 - -
Pslu1g21232 472 MobiDBLite consensus disorder prediction 347 472 - -
Pslu1g21232 472 Pfam NHL repeat 136 162 IPR001258 GO:0005515(InterPro)
Pslu1g21232 472 Gene3D - 35 221 IPR011042 -
Pslu1g21232 472 MobiDBLite consensus disorder prediction 271 290 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21232 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:152619368 Pslu5g13550 Pslu-Chr5:99973899 dispersed
Pslu Pslu-Chr1:152619368 Pslu6g04030 Pslu-Chr6:27287328 wgd