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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21252 ATGACAAATTACAAAATATTTGATGGTAAAAACTTCTTAGAAAAACTAAGAGGAAAAACCATAATGTTTGTAGGAGATTCACTTAGCCGAAACCAATGGTTGTCGATGCTATGCATGATTCACTCGGCGGTCCCAACTGCAAATCATGCAGTTAACATCTCCGTGAGTCAAGATATGACTACCTACACCTTCACGGATTATGCAGTGAAAGTGACATACCATCACAATTTGTACCTGGTAGATATAGTTAGGCAAAGAATTGGGAGAGTATTGAAGTTGGACACCTTGACAGCTGGCAAGATGTGGTTGGATGTTGATTACCTTGTGTTTAACACCTGGCATTGGTGGAACCGGAGAGGAGCCAGCCAACCATTTGATTTTATACAAGACGGGAGTCGTCTATACAAGGACATGGAACGTGTAGTTGCTTTCGGAAAGGCCGTTGTTACATGGGGACAATGGGTTGATGCTAACATCGATCCGAATAAAACTAAAGTATTTTTTCAAGGGATATCACCATCTCATTACAATGGCACGGATTGGGGAGAACCAAAGGTAAAATCTTGCTCCGGACAAAAGATCCCTCTTCTTACCTCCACCTATCCTGGAGTCTCACCACCCTCTTTGGCAGTCCTAAAAAGGTCTTTGAAAACGATCAAGAAACCGGTCACATTGCTCGATGTAACTAACCTATCGTTGTTGCGGAAAGACGGGCACCCATCGGCTTACGGGTTAGGGGTGGTGGATTGCAGCCACTGGTGCCTAGCTGGAGTTCCAGATACTTGGAATGTGTTACTTTACAACCTTATGTTTTGA 816 43.38 MTNYKIFDGKNFLEKLRGKTIMFVGDSLSRNQWLSMLCMIHSAVPTANHAVNISVSQDMTTYTFTDYAVKVTYHHNLYLVDIVRQRIGRVLKLDTLTAGKMWLDVDYLVFNTWHWWNRRGASQPFDFIQDGSRLYKDMERVVAFGKAVVTWGQWVDANIDPNKTKVFFQGISPSHYNGTDWGEPKVKSCSGQKIPLLTSTYPGVSPPSLAVLKRSLKTIKKPVTLLDVTNLSLLRKDGHPSAYGLGVVDCSHWCLAGVPDTWNVLLYNLMF 271
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21252 271 Pfam GDSL-SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 7 268 IPR026057 GO:0016740(InterPro)
Pslu1g21252 271 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 5 269 IPR029962 GO:0005794(PANTHER)|GO:0016413(PANTHER)|GO:0016413(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21252 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:152794965 Pslu5g15376 Pslu-Chr5:112226290 dispersed
Pslu Pslu-Chr1:152794965 Pslu3g16347 Pslu-Chr3:117221847 wgd