Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pslu1g21394 | ATGTCTTGTTCATTACTTTCCCTTACGTTTCCATGCAAACCAAAAACAACGTCCACAAATAACCCATTCAACTCCCATCAATCCTTCAAGACTCGAGCCAACCGAACCCATGGTTCGAGAGTCTCATGCAACGTTGCACCACCACCAAATGACAACCAAGAAAACCAACTCATACTCCCTGAACCACAAAAACTAGTACTACCCAATAATAATGTAGACCGAAGAAACCTTCTCCTTGGGCTCGGTGGCCTTTACACTGCCGCCAACGTACCGGGCGCATTAGCTGCTCCCATTACGGGTCCTGATGATATCTTCTTCTGCAAGCTAGCAGAAATAATGGATAAAAACACCGATAGCATTAAGTCCCTGGCGGGTGGTAGAAGGAGTCGAAACTGTTGCGCTCCTTTTACCAACAAGAAAGTTAAAAATTTCGAGTTTCCAGATCGAAAAGATGCCGTCAGGGTGAGATGGCCTGCACATAAAGGGACTAACGAGCAAATCAAAAAATATAAAGAAGCTTTGAGAATCATGAGGAGTCTCGAACCAGACCACCCGCATAGCTTCGTGAGCCAAGCAAAAATTCACTGCGCTTATTGCAATGCAGGTTACACTCAAGGCGAATCGAATCGTAGGATTCAGATTCATGACTCGTGGCTCTTCTTTCCGTTCCATCGTTGGTACCTTTACTTCTACGAGAGAATACTCGGAAAGTTGATCAACGATCCTACTTTCGCGTTGCCTTACTGGAACTGGGACAATCCGGAGGGCGGAATGGTGATTCCTGCAATCTTTCTAGGTGGTGTTGAAAATCCTCTCTTTGATCAATTTCGAGAGGCTAAAAATCAACCACCAACATTGGTGGATCTGAGCTATGTACCCGGAGGAAAAGGTAATGTCAAAAGGGATATTGAAAATCAAAAAGCATGCAACCTCAGAACTGTGTACAAAGAATTGATCAGTAACGCAGCTGATGCAACCGACTTTTTCGGTGGAAGGTACGTAGTTGGTGGGGATAGGATACCGAAAGTAGGTGGATCCGTTGAAAACGGATCTCACACTGCCATACATGTATTTGTAGGTGACTCAAAACAGCCTTTTAGAGAAGACCTGGGTAACTTCTACTCTGCGGGGTATGACCCTTTGTTCTTCGTCCACCATGCGAATGTCGATCGTATGTGGAAACTATGGAAGGATTTAGGCATTCCTGGACACGTGGAACCCAAGGACCCTGATTGGTTAAACGCGTCATATGTGTTCTACGATGAGAATGAGGATCTTGTACGTGTTTATAATAGAGACAGTGTAGACTTAAACAAACTCAAGTTTAACTACGAACCGTCTGAGTTTGAGATCTCAAACTTGTTGAAGAGTCGACCACCACAACGAAGCAAAAATGCCGAAATAACATTGGATCAAGTGAAATTCCCGGTGACACTGGACAAGATTTTTAAGGTTCGTATGAAGAGGCCAAGCGTAAATCGCACTAAAGAGGATAAGTTGAAAGCGAAGGAGGTTTTGATTATAAGAGACGTAACATATAAAGGTGATAAGCTTGTGAAGTTCGACGTGTTTGTAAATGACAACGTTGAAGGGACTGGGAAAATCCCGGACAATTGTAGTGCCGAGTTCGCAGGAACTTTTTCACGGATTCCACACGGCGATATGAGTGAAATGAGTATGAAGGATGATAAGGAGACGTCATCGGCGAGGTTTGTGTTAACGGAGTTGTTTGAGGACACAAATACTGACGGCCAAGAGGAAGCGTTGGTGGCGTTCGTGCCAAGGACAGGTTGCGAAGATCTCGATATTTCTGGAATCGAGCTTAAGTTGGAGAAAATACTATTGGCCTAA | 1851 | 44.3 | MSCSLLSLTFPCKPKTTSTNNPFNSHQSFKTRANRTHGSRVSCNVAPPPNDNQENQLILPEPQKLVLPNNNVDRRNLLLGLGGLYTAANVPGALAAPITGPDDIFFCKLAEIMDKNTDSIKSLAGGRRSRNCCAPFTNKKVKNFEFPDRKDAVRVRWPAHKGTNEQIKKYKEALRIMRSLEPDHPHSFVSQAKIHCAYCNAGYTQGESNRRIQIHDSWLFFPFHRWYLYFYERILGKLINDPTFALPYWNWDNPEGGMVIPAIFLGGVENPLFDQFREAKNQPPTLVDLSYVPGGKGNVKRDIENQKACNLRTVYKELISNAADATDFFGGRYVVGGDRIPKVGGSVENGSHTAIHVFVGDSKQPFREDLGNFYSAGYDPLFFVHHANVDRMWKLWKDLGIPGHVEPKDPDWLNASYVFYDENEDLVRVYNRDSVDLNKLKFNYEPSEFEISNLLKSRPPQRSKNAEITLDQVKFPVTLDKIFKVRMKRPSVNRTKEDKLKAKEVLIIRDVTYKGDKLVKFDVFVNDNVEGTGKIPDNCSAEFAGTFSRIPHGDMSEMSMKDDKETSSARFVLTELFEDTNTDGQEEALVAFVPRTGCEDLDISGIELKLEKILLA | 616 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pslu1g21394 | 616 | Gene3D | - | 96 | 448 | IPR008922 | - | |
| Pslu1g21394 | 616 | PRINTS | Tyrosinase copper-binding domain signature | 246 | 251 | IPR002227 | GO:0016491(InterPro) | |
| Pslu1g21394 | 616 | PRINTS | Tyrosinase copper-binding domain signature | 378 | 396 | IPR002227 | GO:0016491(InterPro) | |
| Pslu1g21394 | 616 | PRINTS | Tyrosinase copper-binding domain signature | 351 | 362 | IPR002227 | GO:0016491(InterPro) | |
| Pslu1g21394 | 616 | PRINTS | Tyrosinase copper-binding domain signature | 215 | 232 | IPR002227 | GO:0016491(InterPro) | |
| Pslu1g21394 | 616 | ProSitePatterns | Tyrosinase CuA-binding region signature. | 215 | 232 | IPR002227 | GO:0016491(InterPro) | |
| Pslu1g21394 | 616 | ProSitePatterns | Tyrosinase and hemocyanins CuB-binding region signature. | 379 | 390 | IPR002227 | GO:0016491(InterPro) | |
| Pslu1g21394 | 616 | Pfam | Polyphenol oxidase middle domain | 408 | 449 | IPR022739 | GO:0004097(InterPro) | |
| Pslu1g21394 | 616 | Pfam | Common central domain of tyrosinase | 186 | 398 | IPR002227 | GO:0016491(InterPro) | |
| Pslu1g21394 | 616 | PANTHER | TYROSINASE FAMILY MEMBER | 72 | 574 | IPR050316 | - | |
| Pslu1g21394 | 616 | Pfam | Protein of unknown function (DUF-B2219) | 475 | 609 | IPR022740 | GO:0004097(InterPro) | |
| Pslu1g21394 | 616 | SUPERFAMILY | Di-copper centre-containing domain | 130 | 448 | IPR008922 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pslu1g21394 | K00422 | polyphenol oxidase [EC:1.10.3.1] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 134929 | Pslu1g21394 | Pslu5g15171 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Pslu | Pslu-Chr1:153229966 | Pslu1g21394 | Pslu-Chr1:153678021 | dispersed | |
| Pslu | Pslu-Chr1:153357133 | Pslu1g21394 | Pslu-Chr1:153678021 | dispersed | |
| Pslu | Pslu-Chr1:153368078 | Pslu1g21394 | Pslu-Chr1:153678021 | dispersed | |
| Pslu | Pslu-Chr1:153678021 | Pslu3g16399 | Pslu-Chr3:117489451 | dispersed | |
| Pslu | Pslu-Chr1:153678021 | Pslu3g16376 | Pslu-Chr3:117349637 | wgd | |
| Pslu | Pslu-Chr1:153678021 | Pslu5g15171 | Pslu-Chr5:110971609 | wgd |