AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21394 ATGTCTTGTTCATTACTTTCCCTTACGTTTCCATGCAAACCAAAAACAACGTCCACAAATAACCCATTCAACTCCCATCAATCCTTCAAGACTCGAGCCAACCGAACCCATGGTTCGAGAGTCTCATGCAACGTTGCACCACCACCAAATGACAACCAAGAAAACCAACTCATACTCCCTGAACCACAAAAACTAGTACTACCCAATAATAATGTAGACCGAAGAAACCTTCTCCTTGGGCTCGGTGGCCTTTACACTGCCGCCAACGTACCGGGCGCATTAGCTGCTCCCATTACGGGTCCTGATGATATCTTCTTCTGCAAGCTAGCAGAAATAATGGATAAAAACACCGATAGCATTAAGTCCCTGGCGGGTGGTAGAAGGAGTCGAAACTGTTGCGCTCCTTTTACCAACAAGAAAGTTAAAAATTTCGAGTTTCCAGATCGAAAAGATGCCGTCAGGGTGAGATGGCCTGCACATAAAGGGACTAACGAGCAAATCAAAAAATATAAAGAAGCTTTGAGAATCATGAGGAGTCTCGAACCAGACCACCCGCATAGCTTCGTGAGCCAAGCAAAAATTCACTGCGCTTATTGCAATGCAGGTTACACTCAAGGCGAATCGAATCGTAGGATTCAGATTCATGACTCGTGGCTCTTCTTTCCGTTCCATCGTTGGTACCTTTACTTCTACGAGAGAATACTCGGAAAGTTGATCAACGATCCTACTTTCGCGTTGCCTTACTGGAACTGGGACAATCCGGAGGGCGGAATGGTGATTCCTGCAATCTTTCTAGGTGGTGTTGAAAATCCTCTCTTTGATCAATTTCGAGAGGCTAAAAATCAACCACCAACATTGGTGGATCTGAGCTATGTACCCGGAGGAAAAGGTAATGTCAAAAGGGATATTGAAAATCAAAAAGCATGCAACCTCAGAACTGTGTACAAAGAATTGATCAGTAACGCAGCTGATGCAACCGACTTTTTCGGTGGAAGGTACGTAGTTGGTGGGGATAGGATACCGAAAGTAGGTGGATCCGTTGAAAACGGATCTCACACTGCCATACATGTATTTGTAGGTGACTCAAAACAGCCTTTTAGAGAAGACCTGGGTAACTTCTACTCTGCGGGGTATGACCCTTTGTTCTTCGTCCACCATGCGAATGTCGATCGTATGTGGAAACTATGGAAGGATTTAGGCATTCCTGGACACGTGGAACCCAAGGACCCTGATTGGTTAAACGCGTCATATGTGTTCTACGATGAGAATGAGGATCTTGTACGTGTTTATAATAGAGACAGTGTAGACTTAAACAAACTCAAGTTTAACTACGAACCGTCTGAGTTTGAGATCTCAAACTTGTTGAAGAGTCGACCACCACAACGAAGCAAAAATGCCGAAATAACATTGGATCAAGTGAAATTCCCGGTGACACTGGACAAGATTTTTAAGGTTCGTATGAAGAGGCCAAGCGTAAATCGCACTAAAGAGGATAAGTTGAAAGCGAAGGAGGTTTTGATTATAAGAGACGTAACATATAAAGGTGATAAGCTTGTGAAGTTCGACGTGTTTGTAAATGACAACGTTGAAGGGACTGGGAAAATCCCGGACAATTGTAGTGCCGAGTTCGCAGGAACTTTTTCACGGATTCCACACGGCGATATGAGTGAAATGAGTATGAAGGATGATAAGGAGACGTCATCGGCGAGGTTTGTGTTAACGGAGTTGTTTGAGGACACAAATACTGACGGCCAAGAGGAAGCGTTGGTGGCGTTCGTGCCAAGGACAGGTTGCGAAGATCTCGATATTTCTGGAATCGAGCTTAAGTTGGAGAAAATACTATTGGCCTAA 1851 44.3 MSCSLLSLTFPCKPKTTSTNNPFNSHQSFKTRANRTHGSRVSCNVAPPPNDNQENQLILPEPQKLVLPNNNVDRRNLLLGLGGLYTAANVPGALAAPITGPDDIFFCKLAEIMDKNTDSIKSLAGGRRSRNCCAPFTNKKVKNFEFPDRKDAVRVRWPAHKGTNEQIKKYKEALRIMRSLEPDHPHSFVSQAKIHCAYCNAGYTQGESNRRIQIHDSWLFFPFHRWYLYFYERILGKLINDPTFALPYWNWDNPEGGMVIPAIFLGGVENPLFDQFREAKNQPPTLVDLSYVPGGKGNVKRDIENQKACNLRTVYKELISNAADATDFFGGRYVVGGDRIPKVGGSVENGSHTAIHVFVGDSKQPFREDLGNFYSAGYDPLFFVHHANVDRMWKLWKDLGIPGHVEPKDPDWLNASYVFYDENEDLVRVYNRDSVDLNKLKFNYEPSEFEISNLLKSRPPQRSKNAEITLDQVKFPVTLDKIFKVRMKRPSVNRTKEDKLKAKEVLIIRDVTYKGDKLVKFDVFVNDNVEGTGKIPDNCSAEFAGTFSRIPHGDMSEMSMKDDKETSSARFVLTELFEDTNTDGQEEALVAFVPRTGCEDLDISGIELKLEKILLA 616
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21394 616 Gene3D - 96 448 IPR008922 -
Pslu1g21394 616 PRINTS Tyrosinase copper-binding domain signature 246 251 IPR002227 GO:0016491(InterPro)
Pslu1g21394 616 PRINTS Tyrosinase copper-binding domain signature 378 396 IPR002227 GO:0016491(InterPro)
Pslu1g21394 616 PRINTS Tyrosinase copper-binding domain signature 351 362 IPR002227 GO:0016491(InterPro)
Pslu1g21394 616 PRINTS Tyrosinase copper-binding domain signature 215 232 IPR002227 GO:0016491(InterPro)
Pslu1g21394 616 ProSitePatterns Tyrosinase CuA-binding region signature. 215 232 IPR002227 GO:0016491(InterPro)
Pslu1g21394 616 ProSitePatterns Tyrosinase and hemocyanins CuB-binding region signature. 379 390 IPR002227 GO:0016491(InterPro)
Pslu1g21394 616 Pfam Polyphenol oxidase middle domain 408 449 IPR022739 GO:0004097(InterPro)
Pslu1g21394 616 Pfam Common central domain of tyrosinase 186 398 IPR002227 GO:0016491(InterPro)
Pslu1g21394 616 PANTHER TYROSINASE FAMILY MEMBER 72 574 IPR050316 -
Pslu1g21394 616 Pfam Protein of unknown function (DUF-B2219) 475 609 IPR022740 GO:0004097(InterPro)
Pslu1g21394 616 SUPERFAMILY Di-copper centre-containing domain 130 448 IPR008922 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21394 K00422 polyphenol oxidase [EC:1.10.3.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
134929 Pslu1g21394 Pslu5g15171
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:153229966 Pslu1g21394 Pslu-Chr1:153678021 dispersed
Pslu Pslu-Chr1:153357133 Pslu1g21394 Pslu-Chr1:153678021 dispersed
Pslu Pslu-Chr1:153368078 Pslu1g21394 Pslu-Chr1:153678021 dispersed
Pslu Pslu-Chr1:153678021 Pslu3g16399 Pslu-Chr3:117489451 dispersed
Pslu Pslu-Chr1:153678021 Pslu3g16376 Pslu-Chr3:117349637 wgd
Pslu Pslu-Chr1:153678021 Pslu5g15171 Pslu-Chr5:110971609 wgd