AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21415 ATGGCTTCTTATTCTACTACTTCTACTCCTAGTTGGAGTAACCCCCAAACCAAATTCATATCATCTTCAAAACAGGCATTCACTTCATCATCTTCTTCAATTTCTTTCTCAAAAAGATCAAATTCGATTTCTTGTGCACTTCAAACACCTTCGATTCTTCAGATTCCAAAACAAGCTGTGTCGAAAACCTCGACCGCAACCATCGAATTACCGGGTTCTTCTTCGAATTCAACTGCGATGTATAAAAATTTGAACTTTATACAAAAGTTTGCAGCAATGGCATTGGATGCAATTGAAGAAGGAATTGTAGCTAAGGAAAGATTACACCCTTTACCTAAAACAGCAGACCCAGAAATTCAAATCGCCGGAAATTTCTCTCCGGTACCGGAACAACCCGTACGAAAGTCGTTACCGGTCGCCGGAAAAATCCCGGAACATATTGAAGGTGTTTACTTACGTAACGGAGCAAACCCATTATTCGAACCAACTTCCGGCCACCATTTGTTTGACGGCGATGGGATGATTTACGCTGTGAAGTTCGAAAATGGGGAAGCGAGTTACGCTTGTCGGTTCACAGAAACCCAACGGCTCGTTCAAGAACGAGCCATTGGTAAACCGGTTTTTCCCAAGGCAATTGGGGAATTACATGGGCATTCCGGAATTGCAAAATTGCTATTGTTTTATGCTCGTGGTTTGTGTGGTGTGATTGACCACACACACGGCATTGGTGTAGCTAACGCCGGTTTAGTTTATTTTAACAACCGGCTGTTAGCTATGTCAGAAGATGATTTGCCTTATCATGTACGTGTAACACCTTCCGGCGATTTGAAAACTGCCGGGAGGTATAACTTTGATGGCCAACTTGAGTCAACCATGATTGCTCACCCGAAAGTGGATCCAGTTTCGGGTGAACTTTTTGCTCTAAGTTATGACGTAATCAAAAAACCGTACTTGAAGTATTTTCGATTTTCACCGGATGGGAAGAAATCAGAGGATGTTGCAATTGAATTGGAGAAGCCAACTATGGTTCATGATTTTGCGATCACCGAGAATTTTGTTGTTGTTCCTGATCATCAAGTAGTTTTCAAGATGTCGGAAATGATCACCGGTGGGTCACCTGTGGTATACGATAAAGAAAAGGTGTCACGTTTTGGTGTTTTGGACAAATATGCTGAGAACGGGTCGGGTATTAAATGGGTTGAAGTTCCTGATTGTTTTTGTTTTCATTTATGGAATGCTTGGGAAGAACCCGAAAACGACGAGGTTGTCGTGATCGGGTCCTGCATGACTCCCGCGGATTCCATTTTTAATGAATGTAACGAGGAGTTAAAATCCGTTTTATCCGAAATCCGTCTTAACGTGAAAACCGGGAAATCCACTCGTCGCGCGATTATTGCACCCGAAAATGATGTAAATTTGGAAGCAGGAATGGTGAACAAAAACCTTCTGGGCCGAAAAACTAAATACGCGTACTTAGCTATCGCAGAGCCTTGGCCTAAGGTTTCTGGTTTCGCTAAAGTCGATCTCTCGACTGGCGAAACCAAGAAGTTCATCTACGGCGAAGAGAAATACGGAGGCGAGCCGTTGTTTCTTCCCCGTGATGCCAACTCAAGTGACGAAGATGATGGTCACATTTTAGCATTTGTTCATGATGAAAAAACATGGAAGTCAGAGTTACAAATTGTGGATGCAAAGACGTTGGAGTTAACGGCGACCGTTAAGTTGCCGTCGAGGGTTCCGTACGGGTTTCACGGAACATTTATTAGCTCCAAAGATTTGGCAACACAAGCATGA 1794 43.09 MASYSTTSTPSWSNPQTKFISSSKQAFTSSSSSISFSKRSNSISCALQTPSILQIPKQAVSKTSTATIELPGSSSNSTAMYKNLNFIQKFAAMALDAIEEGIVAKERLHPLPKTADPEIQIAGNFSPVPEQPVRKSLPVAGKIPEHIEGVYLRNGANPLFEPTSGHHLFDGDGMIYAVKFENGEASYACRFTETQRLVQERAIGKPVFPKAIGELHGHSGIAKLLLFYARGLCGVIDHTHGIGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGDLKTAGRYNFDGQLESTMIAHPKVDPVSGELFALSYDVIKKPYLKYFRFSPDGKKSEDVAIELEKPTMVHDFAITENFVVVPDHQVVFKMSEMITGGSPVVYDKEKVSRFGVLDKYAENGSGIKWVEVPDCFCFHLWNAWEEPENDEVVVIGSCMTPADSIFNECNEELKSVLSEIRLNVKTGKSTRRAIIAPENDVNLEAGMVNKNLLGRKTKYAYLAIAEPWPKVSGFAKVDLSTGETKKFIYGEEKYGGEPLFLPRDANSSDEDDGHILAFVHDEKTWKSELQIVDAKTLELTATVKLPSRVPYGFHGTFISSKDLATQA 597
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21415 597 Pfam Retinal pigment epithelial membrane protein 128 589 IPR004294 GO:0016702(InterPro)
Pslu1g21415 597 PANTHER BETA-CAROTENE DIOXYGENASE 109 589 IPR004294 GO:0009570(PANTHER)|GO:0010436(PANTHER)|GO:0016121(PANTHER)|GO:0016702(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21415 K09840 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51]
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Event-related genes

Select Gene_1 Gene_2 Event_name
134932 Pslu1g21415 Pslu5g15176
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:28913643 Pslu1g21415 Pslu-Chr1:153844158 dispersed
Pslu Pslu-Chr1:29033458 Pslu1g21415 Pslu-Chr1:153844158 dispersed
Pslu Pslu-Chr1:35346110 Pslu1g21415 Pslu-Chr1:153844158 dispersed
Pslu Pslu-Chr1:153844158 Pslu3g16381 Pslu-Chr3:117375371 dispersed
Pslu Pslu-Chr1:12118705 Pslu1g21415 Pslu-Chr1:153844158 transposed
Pslu Pslu-Chr1:13132756 Pslu1g21415 Pslu-Chr1:153844158 transposed
Pslu Pslu-Chr4:28954076 Pslu1g21415 Pslu-Chr1:153844158 transposed
Pslu Pslu-Chr1:153844158 Pslu3g16377 Pslu-Chr3:117359785 wgd
Pslu Pslu-Chr1:153844158 Pslu5g15176 Pslu-Chr5:111051291 wgd