AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21418 ATGGAGGTAACGAATGTGACCGAGTATCAGGCAATTGCCAAGGAAAAGTTGCCAAAGATGATCTATGACTACTATGCATCTGGTGCTGAGGACCAATGGACCCTAGAAGAGAACAGAAATGCTTTTGCAAGAATCTTGTTTAGGCCCCGTATTCTTATTGATGTGAGCAAGATAGATATGACCACAACAATTTTGGGATTCAAATTATCTATGCCTATAATGATCGCCCCAACGGCTATGCAAAAGATGGCCCACCCTGAAGGTGAATATGCCACAGCTAGAGCTGCATCTGCAGCTGGGACTATTATGACACTGTCATCGTGGGCAACATCTAGTGTTGAGGAGGTTGCATCAACAGGACCTGGAATCCGCTTCTTCCAGCTTTACGTGTACAAGGACCGCAATGTTGTGGCTCAACTTGTGAGAAGAGCTGAACGAGCTGGGTTCAAAGCCATAGCTCTTACAGTTGACACACCACGACTAGGGCGTCGTGAAGCTGATATCAAAAATAGGTTTACTTTACCCCCGTTTTTGACATTGAAAAACTTTGAGGGTCTGGACCTTGGCAAGATGGATGAAGCTAATGACTCTGGATTAGCTTCTTATGTTGCTGGTCAGATCGACCGCACTTTGAGCTGGAAGGATGTGAAGTGGCTTCAGACGATCACTACAATGCCAATCCTTGTGAAGGGTGTGATCACTGCTGAGGATACAAGGTTAGCTATTCAAGCTGGAGCTGCAGGTATAATTGTGTCCAATCATGGCGCTCGTCAACTAGACTATGTCCCTGCTACTATCATGGCTTTAGAGGAGGTTGTGAAAGCTGCACAAGGCCGTGTACCTGTGTTCTTGGACGGTGGTGTGCGTCGTGGTACAGATGTTTTCAAAGCATTGGCACTCGGAGCTTCTGGCATATTTATTGGACGACCTGTGGTGTTTTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAGAAAAGTGCTTCAGATGTTACGCGATGAATTTGAGCTAACCATGGCATTAAGTGGTTGTACATCTCTCAAACAGATCACCCGGGATCACATTGTGACCGAGTGGGACGCTCCAAGGGCTCGTCCTGCACCCAGGTTATAG 1110 46.85 MEVTNVTEYQAIAKEKLPKMIYDYYASGAEDQWTLEENRNAFARILFRPRILIDVSKIDMTTTILGFKLSMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVKWLQTITTMPILVKGVITAEDTRLAIQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCTSLKQITRDHIVTEWDAPRARPAPRL 369
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21418 369 PANTHER S -2-HYDROXY-ACID OXIDASE-RELATED 2 353 - GO:0005777(PANTHER)|GO:0008891(PANTHER)
Pslu1g21418 369 Pfam FMN-dependent dehydrogenase 13 355 IPR000262 GO:0016491(InterPro)
Pslu1g21418 369 SUPERFAMILY FMN-linked oxidoreductases 2 356 - -
Pslu1g21418 369 PIRSF Al-hdrx-acd-dh 1 359 IPR012133 GO:0010181(InterPro)|GO:0016491(InterPro)
Pslu1g21418 369 ProSiteProfiles FMN-dependent alpha-hydroxy acid dehydrogenase domain profile. 1 359 IPR037396 -
Pslu1g21418 369 CDD alpha-hydroxyacid-oxid-FMN 8 351 IPR012133 GO:0010181(InterPro)|GO:0016491(InterPro)
Pslu1g21418 369 FunFam peroxisomal (S)-2-hydroxy-acid oxidase GLO1 1 366 - -
Pslu1g21418 369 ProSitePatterns FMN-dependent alpha-hydroxy acid dehydrogenases active site. 252 258 IPR008259 GO:0016491(InterPro)
Pslu1g21418 369 Gene3D Aldolase class I 1 369 IPR013785 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21418 K11517 (S)-2-hydroxy-acid oxidase [EC:1.1.3.15]
Pslu1g21418 K00101 L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
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Event-related genes

Select Gene_1 Gene_2 Event_name
134933 Pslu1g21418 Pslu5g15180
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:153878940 Pslu3g16382 Pslu-Chr3:117388608 dispersed
Pslu Pslu-Chr1:153878940 Pslu3g16380 Pslu-Chr3:117373128 wgd
Pslu Pslu-Chr1:153878940 Pslu5g15180 Pslu-Chr5:111083107 wgd