AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pslu1g21434 | ATGCTTCGATTGATAAAATCGGTCGTATCTTTAAACGGCCGTCGCCGGATGAGCACCGTAATGAGTTTCGGCGACGGTAGCCACGGCGCTCTCGGCTTACCTACCTCCGTCGCCGGAATCGGCTCCGACGCATACGAACCAACTCCCATCAAATCATTACCTCCGGACGTTTGTAGCATCGCCGCCGGTCACTATCACTCTCTCGCCGTTACCTCCAATGGTCACCTCTGGTCATGGGGCCGGAATGTTGAATCACAACTTGGCCGTGCCCTTGATTCCCCTAGAGAAACATGGGGTGAACCACAAAGGATAAATGGGTTGAGTGGGGTGGAATCTGCATATGCATCAGGTGTTGTATCTGCAGCCATTGATAAACATGGGTCCATGTGGATATGGGGGAAATCGAAACGTGGTCAATTAGGTCTTGGAAAAGGGATCACAGAGGCTGTTTCTCCAAACAGGATAAAAGTTCTTGATAAAGAAGAGATAATCAAGGTGGCATTTGGATGGGGACATGCTCTTGCTCTTACCCAAGATGGAAAGTTGTTTGGTTGGGGTTATTCTGCAGATGGTAGATTAGGAAAGAGAGGAGTTACGGTGGCTTCACCACTCGAGTTGACGGCTAGTTTATCTTCGGGTTTGAATCTTGAAGACGCTGAGAAAGTAGTGTTGGAAGCTATGGATAAGGAGAATGATATGCCTATCATTTGGGAGCCATGTTTGATTGATGAACTAAAAGGCGTTGAAGTTGCTGATGTGTCGTGTGGGCTTGATCACACCTTGATTCTTCTACGTGATGGAACGTTACTAAGTGGTGGAAGTAATGTATATGGGCAATTGGGTAGATCGACACAAGATTTGGAATTTCTTCCTGTTGACATAAGTGTCCACCCTAATTCTATAGCGTCAGGACTAGGTCATTCGTTTGCCATATGCCAAATCCCACCCGCAGAGGGTGGTGGAGGCATAGCGGGTATCTTTTCATGGGGTTGGGGCCAGAGTTCTCAGTTGGGTAGGGAAGGTCCCCCAAACATACCGTTGCTTGTGGATGGACTTTTAGGAGAAAATCCGGTATCAGTGTCAGGCGGGCGTGTGCACTCTATTGCTCTCACATCTACTGGGGAGGTCTTTTCATGGGGATGCGGCAGAAACGGGCGACTCGGTTTGTGCAGTTCTGCAGATGAGCCTGAACCCATGTTGATCGAGCTTTCAGAAGAGACTAATGTTCTACAAGTTGCCTCAGGGTTTGACCATAATCTGGTCCTAACTAGTTGA | 1275 | 48.31 | MLRLIKSVVSLNGRRRMSTVMSFGDGSHGALGLPTSVAGIGSDAYEPTPIKSLPPDVCSIAAGHYHSLAVTSNGHLWSWGRNVESQLGRALDSPRETWGEPQRINGLSGVESAYASGVVSAAIDKHGSMWIWGKSKRGQLGLGKGITEAVSPNRIKVLDKEEIIKVAFGWGHALALTQDGKLFGWGYSADGRLGKRGVTVASPLELTASLSSGLNLEDAEKVVLEAMDKENDMPIIWEPCLIDELKGVEVADVSCGLDHTLILLRDGTLLSGGSNVYGQLGRSTQDLEFLPVDISVHPNSIASGLGHSFAICQIPPAEGGGGIAGIFSWGWGQSSQLGREGPPNIPLLVDGLLGENPVSVSGGRVHSIALTSTGEVFSWGCGRNGRLGLCSSADEPEPMLIELSEETNVLQVASGFDHNLVLTS | 424 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pslu1g21434 | 424 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 180 | 266 | IPR000408 | - | |
| Pslu1g21434 | 424 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 127 | 179 | IPR000408 | - | |
| Pslu1g21434 | 424 | SUPERFAMILY | RCC1-BLIP-II | 18 | 311 | IPR009091 | - | |
| Pslu1g21434 | 424 | PRINTS | Chromosome condensation regulator RCC1 signature | 127 | 143 | IPR000408 | - | |
| Pslu1g21434 | 424 | PRINTS | Chromosome condensation regulator RCC1 signature | 182 | 196 | IPR000408 | - | |
| Pslu1g21434 | 424 | PRINTS | Chromosome condensation regulator RCC1 signature | 369 | 390 | IPR000408 | - | |
| Pslu1g21434 | 424 | PRINTS | Chromosome condensation regulator RCC1 signature | 19 | 35 | IPR000408 | - | |
| Pslu1g21434 | 424 | PRINTS | Chromosome condensation regulator RCC1 signature | 76 | 92 | IPR000408 | - | |
| Pslu1g21434 | 424 | PRINTS | Chromosome condensation regulator RCC1 signature | 166 | 182 | IPR000408 | - | |
| Pslu1g21434 | 424 | PRINTS | Chromosome condensation regulator RCC1 signature | 57 | 70 | IPR000408 | - | |
| Pslu1g21434 | 424 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 267 | 314 | IPR000408 | - | |
| Pslu1g21434 | 424 | Gene3D | - | 226 | 424 | IPR009091 | - | |
| Pslu1g21434 | 424 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 18 | 73 | IPR000408 | - | |
| Pslu1g21434 | 424 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 18 | 423 | IPR051210 | - | |
| Pslu1g21434 | 424 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 60 | 70 | IPR000408 | - | |
| Pslu1g21434 | 424 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 326 | 370 | IPR000408 | - | |
| Pslu1g21434 | 424 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 374 | 422 | IPR000408 | - | |
| Pslu1g21434 | 424 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 127 | 176 | IPR000408 | - | |
| Pslu1g21434 | 424 | Gene3D | - | 7 | 224 | IPR009091 | - | |
| Pslu1g21434 | 424 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 250 | 279 | - | - | |
| Pslu1g21434 | 424 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 57 | 86 | - | - | |
| Pslu1g21434 | 424 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 324 | 373 | IPR000408 | - | |
| Pslu1g21434 | 424 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 374 | 424 | IPR000408 | - | |
| Pslu1g21434 | 424 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 74 | 126 | IPR000408 | - | |
| Pslu1g21434 | 424 | SUPERFAMILY | RCC1-BLIP-II | 326 | 424 | IPR009091 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pslu1g21434 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Pslu | Pslu-Chr1:153994659 | Pslu5g14558 | Pslu-Chr5:107050050 | dispersed | |
| Pslu | Pslu-Chr1:153994659 | Pslu1g02796 | Pslu-Chr1:18703712 | transposed |