AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21446 ATGGCAGCCGTCGGAGCTCATTTCTTCTCTTCCACCGGCATTGTTTCCGTCCGTCCGTCGACATCCTCCCGGACCTTATCATTTTCATCCTCTCATCTCTCCGGCGACAAATTATCTCCGGCTTCATCCGTACAACGACATCGTTCCGGAACTAGTAGACTTTCGCTCACTGTTTCTCCGAAAGCAGTTTCCGATTCTAAAAATTCGCAGACGTGCCTTGATCCTGACGCTAGTCAAAGTGTTTTGGGGATAATACTTGGTGGTGGAGCTGGGACACGGCTTTACCCGTTAACAAAGAAGAGGGCGAAGCCTGCTGTTCCATTAGGAGCAAATTACAGGCTTATTGATATTCCTGTTAGCAACTGTTTGAACAGCAATATATCGAAGATTTATGTCCTAACACAATTTAACTCTGCGTCACTTAATCGCCACCTTTCGAGGGCTTATGCGAGTAACATGGGTGGTTATAAGAACGAAGGATTTGTTGAAGTCCTTGCTGCTCAACAGAGTCCAGAGAATCCAAATTGGTTCCAGGGTACTGCTGATGCTGTACGCCAGTATCTGTGGCTATTTGAAGAGCACAATGTTTTAGAGTTTCTAATTCTTGCTGGAGATCATTTGTACCGGATGGATTATGAGAAATTTATTCAAGCTCATAGAGAAACTGATGCTGATATCACTGTAGCAGCTCTGCCAATGGATGAAAAACGTGCCACTGCATTTGGTTTAATGAAGATTGACGAAGAAGGGCGTATAACTGAATTTGCAGAGAAACCGAAGGGAGAGCAACTGAAAGCTATGAAGGTTGATACTACGATTTTAGGCCTTGATGAAGAGAGAGCTAAAGAGATGCCTTATATTGCTAGTATGGGTATATATGTTGTCAGCAAAGATGTAATGTTGAATTTGCTGCGTGATAAGTTCCCTGGAGCTAATGATTTTGGAAGTGAAGTAATTCCTGGAGCAACTTCTATTGGGCTCAGAGTACAAGCTTATCTCTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCATTCTATAATGCCAATCTGGGAATCACCAAAAAGCCAGTGCCAGATTTCAGCTTCTATGATCGTTCATCCCCTATTTACACCCAACCCCGATATTTGCCTCCTTCCAAGATGCTTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGGTGTGTGATTAAGAACTGCAAAATTCATCATTCTGTTGTTGGGCTTCGATCTTGCATAGCTGAGGGTGCAGTCATTGAAGATTCATTGTTGATGGGAGCAGATTATTACGAGACTGATGCTGATAAGGAGCTTCTTGCTGCAAAAGGTAGTGTTGCGATTGGCATAGGGAAGAACACTCATATCAAAAGAGCAATCATAGACAAAAATGCACGCATAGGAGACAATGTGAAGATTATAAACAGCGATAACGTTCAAGAAGCAGCAAGAGAAACAGAGGGGTACTTCATAAAAAGTGGAATTGTGACAGTTATCAAAGATGCGTTGATTCCATCTGGCAGCATAATCTAG 1536 42.84 MAAVGAHFFSSTGIVSVRPSTSSRTLSFSSSHLSGDKLSPASSVQRHRSGTSRLSLTVSPKAVSDSKNSQTCLDPDASQSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRITEFAEKPKGEQLKAMKVDTTILGLDEERAKEMPYIASMGIYVVSKDVMLNLLRDKFPGANDFGSEVIPGATSIGLRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCIAEGAVIEDSLLMGADYYETDADKELLAAKGSVAIGIGKNTHIKRAIIDKNARIGDNVKIINSDNVQEAARETEGYFIKSGIVTVIKDALIPSGSII 511
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21446 511 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 87 106 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Pslu1g21446 511 CDD ADP-Glucose-PP 92 341 - -
Pslu1g21446 511 Gene3D Hexapeptide repeat proteins 377 511 - -
Pslu1g21446 511 FunFam Glucose-1-phosphate adenylyltransferase 377 511 - -
Pslu1g21446 511 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 61 376 IPR029044 -
Pslu1g21446 511 NCBIfam glucose-1-phosphate adenylyltransferase 81 475 IPR011831 GO:0005978(InterPro)|GO:0008878(InterPro)
Pslu1g21446 511 SUPERFAMILY Nucleotide-diphospho-sugar transferases 80 472 IPR029044 -
Pslu1g21446 511 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 288 298 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Pslu1g21446 511 SUPERFAMILY Trimeric LpxA-like enzymes 374 511 IPR011004 -
Pslu1g21446 511 FunFam Glucose-1-phosphate adenylyltransferase 62 376 - -
Pslu1g21446 511 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 176 184 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Pslu1g21446 511 CDD LbH-G1P-AT-C 379 505 - -
Pslu1g21446 511 Pfam Nucleotidyl transferase 83 356 IPR005835 GO:0009058(InterPro)
Pslu1g21446 511 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 42 511 IPR011831 GO:0005978(InterPro)|GO:0008878(InterPro)
Pslu1g21446 511 MobiDBLite consensus disorder prediction 26 51 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21446 K00975 glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:154048213 Pslu4g09081 Pslu-Chr4:64587196 dispersed