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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21458 ATGGCAAAGCAAAAGATCGTCGTGAAAGTGACGATGTGCTGCGAGAAGAAAACTCGCAAGGCTCTCAAGATCGCCGTTAGTCTCACTGGAGTTGAGTCAGCGTCTTTCGTTGGATCAGATAAAGACCAAATAGCGGTGATTGGAGAAGGGATTGACTCGGTCGAATTGGCGACGTTACTAAGAAAAGGTGTAGGATATACAGAGTTACTTAGTGTTGGTCTCCTGGAGGAAAAGAAACCCGAACCCAAGGAAACAAAGCCCACGATCGTGCCGATACAAATCAATCCTTACCCGTATTGCTACTACCATGGCTATGGATGGCCGTATTGTTTTTGTGACATGTGA 345 46.09 MAKQKIVVKVTMCCEKKTRKALKIAVSLTGVESASFVGSDKDQIAVIGEGIDSVELATLLRKGVGYTELLSVGLLEEKKPEPKETKPTIVPIQINPYPYCYYHGYGWPYCFCDM 114
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21458 114 Gene3D - 1 78 - -
Pslu1g21458 114 ProSiteProfiles Heavy-metal-associated domain profile. 3 72 IPR006121 GO:0046872(InterPro)
Pslu1g21458 114 PANTHER OS04G0464100 PROTEIN 4 87 IPR044296 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21458 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:154098418 Pslu1g21462 Pslu-Chr1:154112169 dispersed
Pslu Pslu-Chr1:154093466 Pslu1g21458 Pslu-Chr1:154098418 tandem
Pslu Pslu-Chr1:154098418 Pslu1g21459 Pslu-Chr1:154101620 tandem