AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21491 ATGGTGGTTATCGACGGCGTTAACGTATCGTACACTTTCGATTACCGGTCGACGAACGATGACGCGTGGTACAACTGCGGCATCGTTCTCGATCGCGGAAAACAGCAGCTTCGCGTTAAGTTTGAGCATTTCCAGCAGATAGAACATGACGAGGTTTTCTCGACTACTGATTTCAAAGATCGAGATGAACTCGATGAATTCCTCGCTAGATTCCGTCCAGTTTCACAGGCGCTTTACGATCACGAGTGCTCCAAAGTGATTGAAGGAATGACGGTTTGTGCTACCTATGGAGATGAAGATTCACTTCGATACTTTGACGCCGTCGTTGATGCTGTGTATTACAAAGAGCATACGGCTGAGAAGTGCCTATGCACCTTTATGTTATTCTGGCAGCATGGTCCTCAAGAGGGAAATATTACAGCAACAAAACTTGAGAATGTAAGCCTCATACGGCATGGTGCTGGTGATCCCATACTTGTCAAATTCACAAAGCTTGTGGAGGAAAAGCTTAGAGGGCCCTCTTCTGAGTTTTTTCTGATCCCAAAGAGCTCGTTTTTGTCTAAAATAACAAGCTCAAGTGAAACTCTCTTATCAGAGGAGTTTGGCAGTGTGGGACAGAGTTCTCACGTTGGATGCTTTGAAGGGAGGGAAAGGTTATTCCCTGAGTTGAGTGATCAGGACAGAGAGTTGGGAGGTATCAAAGAAACTGGACATCATCATTACATAATGATAGAAAATTTGGAGAGAGATTTATGCCCGACATCAATGATGATGTTCATGCATGAGCAAACTTCAATCACAGCACAGGCATACGTTTTCCCAAACTTGTCAGTAGAAACGTATGCAAGAGGAGCAATTGTGGTGGACAGTAAATCAAATCTCAAGAGGATATATGAATTTATAAACAATCCAAATCAGTTTATTGTATCTTCAACTGGAAGGCCATGGGTAATAGCTGAAGACAAACTTAGGATTGGAAATTTCAAGACAAACCTGCAGGGCTTGCAGCCGCGGCTTGAGAACTTAAATGTAGATGGTGAACTGAAAGTCGTCTGGTTAGGAACAGAAGAGTACAAGAAAGCTAAACAACTAAAAGATCTCTTTGTGGAATATCGTAATCATCTAAATGGACTTGCGGAAAGATATACTGGTGTATTGGATGCAAAAGTTTTTGAAGAATCGTTTGGCAAAATTTATCTAGGCAATAATATCCTCACTATCAATGTGTCTAGATATCAAAGGAAGATTAGGGTTTATCATCCAAACACCAATCAACATCATAAATCTAAGCCTGCACCACCTCCTTCTGCGCCTATGTCTGCTTGGGGTTTTTGTGGTAACAGAAGTTTCGCTAATGTAGTTTCTGGTAATAGCAAGGCGGTTCAGGAAAACCCTATTCATATCAAACTTTGCCCATCCCAGGAGTTAGATATGGTGCTCTCTGAAACATTCTTAGTTGGTGAGGTTTTCGATTCAGAAATCTTAAAGGCTATTCCTAACTTACTCAAAGATGGTGGCATTAATTTCGGTAGAGTCTTCTTTTACGGTGGACTTTATGTTTTGATTGGTTTTGATGACAAAGCTGAAGCCATAGGGTTAATTGAAAACAAGGAATGCTGGAGCATATGGTTTAACCGGATTCAAATGGGCAATCATGTAACCGATCTAAAATATCAAAGAGCATCAGATATCGAAATTGTGGGTCTTCCCATGAAATATCGTTCGCCTGATAACATTACTAAAATTCTTAGCAACTTTGGTAAAGTATTAATGGTGGAAAATGATATCTGGAAAAACGATTTATCGCATTGCACGGGTTGTATCTTAACAGAATCATTGTCTAAGATTAATGAAGTCATCACCATTGAAATCGAAGACAATAAATATATATCCATTGGAATTATTGAAAAGGAATTCGGATTGAAACCATTTGGTGATGACGGCTTATGGGGTGAAGATGATTCAAAAGAAGTTAAGGATTCGGTCGATAACGAACACTTGGAGAATGAGTCAATGGATAGTGATAACTTTACTGATTCATCCGACACTGAATGGGAAGAAGGTGAGTTTAGGCCTGCCGATCCAGTTGATCCTATGGAGGTTTCGAATAAGTTTTCTCCGGTGAATGTCGAATGTTTCCCGGCCGATGAGGTTTCTGGCACTGCAATTAATGCGTCTAATAATCCTGTTATCGAAGAAACGGTTATCGAAGAGTCCTGCGGTTGTGCTAATGTTCCCCATGCAAATCATGTTGCATTTGATTCGGCGCCAAACATTCAAATTCCATGGGGCCCATTAGTGATGTTAATCAGTTGGGCTCATTATTTTATGTGA 2334 40.66 MVVIDGVNVSYTFDYRSTNDDAWYNCGIVLDRGKQQLRVKFEHFQQIEHDEVFSTTDFKDRDELDEFLARFRPVSQALYDHECSKVIEGMTVCATYGDEDSLRYFDAVVDAVYYKEHTAEKCLCTFMLFWQHGPQEGNITATKLENVSLIRHGAGDPILVKFTKLVEEKLRGPSSEFFLIPKSSFLSKITSSSETLLSEEFGSVGQSSHVGCFEGRERLFPELSDQDRELGGIKETGHHHYIMIENLERDLCPTSMMMFMHEQTSITAQAYVFPNLSVETYARGAIVVDSKSNLKRIYEFINNPNQFIVSSTGRPWVIAEDKLRIGNFKTNLQGLQPRLENLNVDGELKVVWLGTEEYKKAKQLKDLFVEYRNHLNGLAERYTGVLDAKVFEESFGKIYLGNNILTINVSRYQRKIRVYHPNTNQHHKSKPAPPPSAPMSAWGFCGNRSFANVVSGNSKAVQENPIHIKLCPSQELDMVLSETFLVGEVFDSEILKAIPNLLKDGGINFGRVFFYGGLYVLIGFDDKAEAIGLIENKECWSIWFNRIQMGNHVTDLKYQRASDIEIVGLPMKYRSPDNITKILSNFGKVLMVENDIWKNDLSHCTGCILTESLSKINEVITIEIEDNKYISIGIIEKEFGLKPFGDDGLWGEDDSKEVKDSVDNEHLENESMDSDNFTDSSDTEWEEGEFRPADPVDPMEVSNKFSPVNVECFPADEVSGTAINASNNPVIEETVIEESCGCANVPHANHVAFDSAPNIQIPWGPLVMLISWAHYFM 777
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21491 777 Pfam SAWADEE domain 11 147 IPR032001 GO:0003682(InterPro)
Pslu1g21491 777 MobiDBLite consensus disorder prediction 652 698 - -
Pslu1g21491 777 PANTHER SAWADEE PROTEIN 10 382 - -
Pslu1g21491 777 Gene3D - 78 148 - -
Pslu1g21491 777 MobiDBLite consensus disorder prediction 652 673 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21491 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:154300324 Pslu1g21491 Pslu-Chr1:154311530 dispersed
Pslu Pslu-Chr1:154311530 Pslu5g03327 Pslu-Chr5:23623963 dispersed
Pslu Pslu-Chr6:99310453 Pslu1g21491 Pslu-Chr1:154311530 dispersed
Pslu Pslu-Chr1:154305120 Pslu1g21491 Pslu-Chr1:154311530 tandem