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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21499 ATGACATTCCGTAATCAAACTTGTTCAAGGAATGAAGCTGGAAGTGCATTTCAAAATATATCAGGAGCAACTATTTTAGGTAAAATGGAAAATTTGTTAAAGGGTTCTGAAAATGAAGTTGATCAAGTCGACATGCTGAATGCTACTTATGATGGTTATGGAGGTGTCATTGTGAAAGTTGAAGACGATATGGACGAAAATATCTTCACCACTTTACTTCAAACATCACTTTCCCAATGGAGGCTGCAGGAAAAGAAGGGAGTTTGGCTCAAATTGCCACTTGAACTTGTGAATCTTGTTAAGCCTGCAGTAAAGGAAGGATTTTGGTACCATCATGCCGAACCAACATACTTGATGCTCGTGTATTGGATCCCTGAAACTAATAACACTCTCCCACCAAATGCTTCCCATCGAGTCGGTGTTGCTTCATTTGTGGTCAACGATAATGGGGAGCTTCTTGTGGTCCAAGAAAAAAGTGGAGTGTTCAAAGGCTCAGGGGTCTGGAAGTTACCAACTGGTACTGTTGAGGAGGGTGAAGATTTAAGTGCAGCTGCAATCAGGGAAGTGAAAGAAGAGGCTGGAATTGATACAGATTTCATGGAAGTCCTTGCATTCAGGCAAAGCCACAAGTCATTTTATACTAAGTCGGATCTAATGTTTGTGTGTATGCTAAAACCAATATCATTCGATATTGTCAAGCAAGATTCAGAGATTGAAGCAGCACAGTGGATGCCAGTGGAAGAATATGCTAACCAACCCTTTATTAAAGAACACAAATCCTTTGACTACATTGCTAAAATATGCATAGCGAAAAAAGATAACAAATATGATGGCTTCTCTGCATTGCCTACATCAACAGCTACATCTGCCAAAAAGAGCTATTTGTATTCCAGTTATCAAGACCACTGTTGGTTAGTTTATACGAGTAGTTCAAGTTTGAACGTTTCTGAGAAACCACGAGATGGTTATGGTGATGGTGTAACATCAGTATCTCCACCAGCTGCATGTCAATATCCATGCGGCCCTCAACCTCCTCTACAACAACCACCACCGCCTCCACCGCGTGGAGGAAGTGCGATATATGGTGGTCCACCACCTCCTGCAGGCGTTAATTGTCCACCTGTGACTCCTGTTATGTGCTGCCAAAACTCACCTCCTAATCCCATGCCTAATTATGGTTATCCTAATTATGGAAATTATACAGAAAGCTCTAGCTTTTCGAGTACCCCGTGTTATGCTATGCTGCTGTTGATTCCTTTTGTCTTTGTTTTTGGTGTTTGA 1281 41.45 MTFRNQTCSRNEAGSAFQNISGATILGKMENLLKGSENEVDQVDMLNATYDGYGGVIVKVEDDMDENIFTTLLQTSLSQWRLQEKKGVWLKLPLELVNLVKPAVKEGFWYHHAEPTYLMLVYWIPETNNTLPPNASHRVGVASFVVNDNGELLVVQEKSGVFKGSGVWKLPTGTVEEGEDLSAAAIREVKEEAGIDTDFMEVLAFRQSHKSFYTKSDLMFVCMLKPISFDIVKQDSEIEAAQWMPVEEYANQPFIKEHKSFDYIAKICIAKKDNKYDGFSALPTSTATSAKKSYLYSSYQDHCWLVYTSSSSLNVSEKPRDGYGDGVTSVSPPAACQYPCGPQPPLQQPPPPPPRGGSAIYGGPPPPAGVNCPPVTPVMCCQNSPPNPMPNYGYPNYGNYTESSSFSSTPCYAMLLLIPFVFVFGV 426
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21499 426 ProSitePatterns Nudix box signature. 173 194 IPR020084 GO:0016787(InterPro)
Pslu1g21499 426 FunFam nudix hydrolase 2 43 129 - -
Pslu1g21499 426 PRINTS NUDIX hydrolase family signature 182 197 IPR020476 -
Pslu1g21499 426 PRINTS NUDIX hydrolase family signature 168 182 IPR020476 -
Pslu1g21499 426 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 138 277 - -
Pslu1g21499 426 MobiDBLite consensus disorder prediction 341 363 - -
Pslu1g21499 426 Pfam NUDIX domain 137 259 IPR000086 -
Pslu1g21499 426 PANTHER NUDIX HYDROLASE RELATED 34 300 IPR003293 GO:0035529(PANTHER)|GO:0047631(PANTHER)|GO:0051287(PANTHER)
Pslu1g21499 426 Pfam Nudix hydrolase domain 46 124 IPR040618 -
Pslu1g21499 426 SUPERFAMILY Nudix 104 265 IPR015797 -
Pslu1g21499 426 Gene3D - 43 129 - -
Pslu1g21499 426 ProSiteProfiles Nudix hydrolase domain profile. 136 268 IPR000086 -
Pslu1g21499 426 CDD Nudix-Hydrolase-12 137 268 - -
Pslu1g21499 426 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 222 246 IPR003293 -
Pslu1g21499 426 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 134 152 IPR003293 -
Pslu1g21499 426 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 96 114 IPR003293 -
Pslu1g21499 426 FunFam Nudix hydrolase 8 138 276 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21499 K26956 ADP-ribose/NAD+ diphosphatase [EC:3.6.1.13 3.6.1.22]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:154361544 Pslu7g10947 Pslu-Chr7:82525244 dispersed