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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21531 ATGTTCCATCACACACCAGTTCCCCAAAACATGTTGCTACTGACACCACCATCATCATCATCATCAACTGATCGTGAGCTGACCGTTACTCGTCCTTCCGGTGAAATTCATGTTATTGTCGGCCCGATGTTTGCTGGTAAAACAACTGCTCTTCTTCGCCGGATCAAATCGGAAGCCACCAACGGCAGGAAAATAGCAATGATAAAATCAAGCAAAGATAACAGATATGCAATTGATTCAGTTGTAACACATGATGGAACAAAGTATCCATGTTGGGCACTTCTTGATTTGTTGTCTTTTAAGCAAAAACTTGGACAAGAAGCTTATGATAAGCTGGATGTAATTGGTATTGATGAGGCACAATTCTTTGATGATCTTTATGACTTCTGTTGTAAAGCTGCTGATCATGATGGGAAAACTGTTATAGTTGCGGGTCTTGACGGCGATTACTTAAGAAGGAATTTTGGTCCAGTACTTGATATAGTTCCAATTGCTGATACTATAACCAAGTTAACCGCTAGATGTGAGGTGTGTGGCAAACGGGCCCATTTCACGCTAAGGAAGACTAATGAGACAAAAACTGAACTTATTGGTGGGGCAGATATGTATATGCCTGTTTGTCGTCAGCATTATGTTAATGGACATACGGTGATCAAAACTGTCGCTTAA 669 40.81 MFHHTPVPQNMLLLTPPSSSSSTDRELTVTRPSGEIHVIVGPMFAGKTTALLRRIKSEATNGRKIAMIKSSKDNRYAIDSVVTHDGTKYPCWALLDLLSFKQKLGQEAYDKLDVIGIDEAQFFDDLYDFCCKAADHDGKTVIVAGLDGDYLRRNFGPVLDIVPIADTITKLTARCEVCGKRAHFTLRKTNETKTELIGGADMYMPVCRQHYVNGHTVIKTVA 222
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21531 222 MobiDBLite consensus disorder prediction 1 26 - -
Pslu1g21531 222 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 172 214 - -
Pslu1g21531 222 Gene3D - 27 171 IPR027417 -
Pslu1g21531 222 ProSitePatterns Thymidine kinase cellular-type signature. 198 211 IPR020633 GO:0004797(InterPro)|GO:0005524(InterPro)
Pslu1g21531 222 MobiDBLite consensus disorder prediction 11 26 - -
Pslu1g21531 222 FunFam Thymidine kinase 172 214 - -
Pslu1g21531 222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 172 IPR027417 -
Pslu1g21531 222 PIRSF Tdk 31 221 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
Pslu1g21531 222 FunFam Thymidine kinase 30 171 - -
Pslu1g21531 222 Pfam Thymidine kinase 34 211 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
Pslu1g21531 222 Gene3D - 172 213 - -
Pslu1g21531 222 PANTHER THYMIDINE KINASE 29 219 IPR001267 GO:0004797(PANTHER)|GO:0004797(InterPro)|GO:0005524(InterPro)|GO:0046104(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21531 K00857 thymidine kinase [EC:2.7.1.21]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:154592735 Pslu7g10876 Pslu-Chr7:82051570 dispersed