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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21540 ATGACTATGGTTTTACACTCAAAATCCACATTATTCATGTCCACCATTCTTGTTTCTGTATTCTTCATTACAACTGCTCAAACATGTTCAAATCACACTTTTACATCCAAAAGGGTCTTCAATTCTTGCAAAGATCTTCGATATCTCAATGCCAATCTCCATTGGACCTACTTCGAGTCCTTAAAAGTAGCCAAGATTGCATTTAGAGCCCAACGCACCCACAAGGAATGGATTGCTTGGGCCATTAATCCGTACAGAAGAGGCATGGTTGGATCACAAGCGCTGGTGGCTTTTAGTGACGGTAGAGGCAAGGTGTCTGTGTATACAACGAGCGTCAATGGATACAACCCGTCAATGAAGCCTAGTAAACTCAAGTTTCGTGTTTCGGAACTCTCAGCAGAGTATGCAAACAATGAGATGACCATTTTTGCAATCGTGGGCCCACTTGCGAACGGCCCTTTAGTCAATCAAGTGTGGCAAGTTGGGAGCTTGGATCAGAATGGTATCCCTCAAATGCATGCAATGGAGTTTCAGAATCTTCAATCGACTGGAGTCATTGATTTTTCGTCCACTCTTTAA 579 42.83 MTMVLHSKSTLFMSTILVSVFFITTAQTCSNHTFTSKRVFNSCKDLRYLNANLHWTYFESLKVAKIAFRAQRTHKEWIAWAINPYRRGMVGSQALVAFSDGRGKVSVYTTSVNGYNPSMKPSKLKFRVSELSAEYANNEMTIFAIVGPLANGPLVNQVWQVGSLDQNGIPQMHAMEFQNLQSTGVIDFSSTL 192
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21540 192 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 11 190 - -
Pslu1g21540 192 CDD DOMON-CIL1-like 40 190 IPR045265 -
Pslu1g21540 192 Pfam Protein of unknown function (DUF568) 89 188 IPR045265 -
Pslu1g21540 192 ProSiteProfiles DOMON domain profile. 49 162 IPR005018 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21540 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:154636297 Pslu3g00335 Pslu-Chr3:2659840 dispersed
Pslu Pslu-Chr1:154634883 Pslu1g21540 Pslu-Chr1:154636297 tandem