AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21541 ATGGGTAAATTCTTAGCTATTCTTTTTTGCATTCTGGTATCAAATTTAACAGTTTCGTATGGTCAAAGTTGCAACAATTATGCGTTTCGAAGTAACGCAATCTATGCTACATGTGTTACTTTACCTGTTTTAAACTCACATCTTCATTGGAACTACAACAACAACGGCACCGTCGACGTGGCTTTCCGGCACACCGGATCCACCACATCTCAATGGGTTTCATGGGCGCTCAACGTTGGCGGGTCGGGTATGCTTGGTGCTCAAGCACTCGTTGCTATACCGAATTCGAACGGGTCTGTTGAAGCTTACACGTCGGCAGTAACGAGTTACGGAACGAGTTTGCAACGGAGTCCGTTGAGTTTTGATGTTCCGGCGATCAGGGCGGAAAGAGTTAACGGAGATGTGGTGATTTATGCGACGTTGGTGTTGCCACGTGGCACGACAAGTTTTAATCAAGTATGGCAAGTGGGTCCGGTTACTAGTGGAGTTCCGAGTATTCATGCTTTGAATCCGGATAACCGGAATTCTGTTGGAAGGGTGGATTTTACCACCGGTCAGACTACCGCCGGTGGTAATGTTGGTGGTCCACGGCAGCACCGGAAAAACACTCATGGAGTATTGAATGCGGTTAGCTGGGGAGTTTTGATGCCTATTGGAGCTATGGCAGCAAGATATTTAAAGGTGTTTAAAGCAGCTAATCCAGCTTGGTTTTATATCCATGTTGGTTGCCAAACTTCGGCCTATATTGTCGGTGTCGCTGGATGGGCCACTGGACTCAAGCTCGGCAGTGACTCCGTCGGAGTTAAATACAACGCTCACCGGAACATTGGAATTACCCTCTTTGCACTTGCAACACTTCAGGTTTTTGCTCTGCTTTTGCGGCCCAAGCCAGACAACAAATACAGATTCTACTGGAACATCTACCACCAAAGTATTGGATACGCTGTCATCATCTTGAGCATCATCAATGTCTACAAGGGACTCGATATATTGGACCCTGAGAAGAAATGGAAGAATGCATACACCGGCATACTCATTGCTTTGGGTGTTATTGCAGTTTTTTGGGAAGCGTTAACATGGTTCATTGTTTTAAAGCGGAAGAAGGAAGACAAAAGGACACATGCAGGAACTAATGGTTATGGAGCCAATGGGTTCGGTCAGCCCGTGTAG 1170 46.32 MGKFLAILFCILVSNLTVSYGQSCNNYAFRSNAIYATCVTLPVLNSHLHWNYNNNGTVDVAFRHTGSTTSQWVSWALNVGGSGMLGAQALVAIPNSNGSVEAYTSAVTSYGTSLQRSPLSFDVPAIRAERVNGDVVIYATLVLPRGTTSFNQVWQVGPVTSGVPSIHALNPDNRNSVGRVDFTTGQTTAGGNVGGPRQHRKNTHGVLNAVSWGVLMPIGAMAARYLKVFKAANPAWFYIHVGCQTSAYIVGVAGWATGLKLGSDSVGVKYNAHRNIGITLFALATLQVFALLLRPKPDNKYRFYWNIYHQSIGYAVIILSIINVYKGLDILDPEKKWKNAYTGILIALGVIAVFWEALTWFIVLKRKKEDKRTHAGTNGYGANGFGQPV 389
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21541 389 CDD DOMON-CIL1-like 35 184 IPR045265 -
Pslu1g21541 389 ProSiteProfiles DOMON domain profile. 44 157 IPR005018 -
Pslu1g21541 389 Pfam Protein of unknown function (DUF568) 84 182 IPR045265 -
Pslu1g21541 389 Gene3D - 186 374 - -
Pslu1g21541 389 ProSiteProfiles Cytochrome b561 domain profile. 163 364 IPR006593 -
Pslu1g21541 389 PIRSF UCP037471 1 386 IPR017214 -
Pslu1g21541 389 CDD Cyt-b561-FRRS1-like 175 357 - -
Pslu1g21541 389 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 7 368 - -
Pslu1g21541 389 SMART 561-7 203 328 IPR006593 -
Pslu1g21541 389 FunFam Cytochrome b561 and DOMON domain-containing protein 182 372 - -
Pslu1g21541 389 Pfam Eukaryotic cytochrome b561 204 328 IPR006593 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21541 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
134959 Pslu1g21541 Pslu5g15260
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:154642951 Pslu5g15260 Pslu-Chr5:111558767 dispersed
Pslu Pslu-Chr1:58245736 Pslu1g21541 Pslu-Chr1:154642951 transposed
Pslu Pslu-Chr1:74356604 Pslu1g21541 Pslu-Chr1:154642951 transposed
Pslu Pslu-Chr4:29766655 Pslu1g21541 Pslu-Chr1:154642951 transposed
Pslu Pslu-Chr4:57323851 Pslu1g21541 Pslu-Chr1:154642951 transposed
Pslu Pslu-Chr5:28480054 Pslu1g21541 Pslu-Chr1:154642951 transposed
Pslu Pslu-Chr5:31148791 Pslu1g21541 Pslu-Chr1:154642951 transposed
Pslu Pslu-Chr7:81996674 Pslu1g21541 Pslu-Chr1:154642951 transposed
Pslu Pslu-Chr1:154642951 Pslu5g15256 Pslu-Chr5:111548765 wgd