AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21608 ATGCGGTTCTTGATGTCAACTACAAGCCCTAGCTTTCCATCTCCACCTCCTTTTCATCAAACTACAATCAAACAACCCCAACTTATACCACTTCAAAAACCAACAAAACCCCATGAAAGTTCTATAAAATCCATGAAAAATTCTGGGTTTTTATCAGCAATTGGGAATGCAATTGAAGAACAAGAATATAGGAAAGCTAGGGCTGAAGTTATAAGAAAAGGAACTGGTTTAGATGGTTATAATATTGAAGGGCTTTCAATTGGTGGTCATGAAACTTGTATTATAATTCCTGAGTTTAAGTGTGCTTTTGATATTGGAAGGTGTCCACCAAGAGCTGTTGCCATGAATTACTTGTTTATTACTCATGCCCATCTTGATCACATTGGTGGACTACCCATGTATGTTGCCACTCGTGGTTTATACAGCATGAGTCCTCCAACTGTATTTGTGCCTCCTTCAATTAAAGAGGACGTGGAAAACTTGATGGACCTTCACAGAAAGATGGGTCAGGTGGAGTTAAATCTTGACTTGGTTGCATTGGATGTAGGAGATACATATGAGCTAAGAAACGACCTTGTTGTACGCCCATTTAAAACTCATCATGTGATACCCAGTCAGGGTTATGTAATTTACTCGGTTCGGAAGAAGCTAAAGAAGCAATATGCTCATCTGAAAGGAAGAGAGATAGAGAAAAAGAAGAAATCTGGTGTTGAGATCACAGATATCATATTATCCCCTGAGGTGGCATTCACCGGAGATACAAGTTCTGATTTTTTACTTGATCCACGGAGTTCTGATGCCTTGAGGGCAAAAGTTCTCATAACTGAGGCTACTTTTTTGGATGACAAATGCACAATTGAGCATGCACGAGAACATGGTCACATGCATATTGATGAGATTATAGAGCATGCTAAGTGGATTCGGAACAATGCCATTCTTTTGACTCATTTCTCCTCACGTTACCATACTGAGGAAATTCGTCAAGCTGTGACAAAGTTGCAGTCAAAGGTTTCAGCCAAAGTGGTTCCACTTACAGAAGGTTTTAGATCAATGTATTCATCATAA 1065 39.34 MRFLMSTTSPSFPSPPPFHQTTIKQPQLIPLQKPTKPHESSIKSMKNSGFLSAIGNAIEEQEYRKARAEVIRKGTGLDGYNIEGLSIGGHETCIIIPEFKCAFDIGRCPPRAVAMNYLFITHAHLDHIGGLPMYVATRGLYSMSPPTVFVPPSIKEDVENLMDLHRKMGQVELNLDLVALDVGDTYELRNDLVVRPFKTHHVIPSQGYVIYSVRKKLKKQYAHLKGREIEKKKKSGVEITDIILSPEVAFTGDTSSDFLLDPRSSDALRAKVLITEATFLDDKCTIEHAREHGHMHIDEIIEHAKWIRNNAILLTHFSSRYHTEEIRQAVTKLQSKVSAKVVPLTEGFRSMYSS 354
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21608 354 PANTHER TRNASE Z TRZ1 33 348 - -
Pslu1g21608 354 SUPERFAMILY Metallo-hydrolase-oxidoreductase 113 328 IPR036866 -
Pslu1g21608 354 Gene3D - 80 349 IPR036866 -
Pslu1g21608 354 Pfam Beta-lactamase superfamily domain 114 317 IPR001279 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21608 K00784 ribonuclease Z [EC:3.1.26.11]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:155103441 Pslu6g14663 Pslu-Chr6:108253052 dispersed