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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21624 ATGAAATTTGACCAACAAGAACTCAACCAACAGGAGCGTGACACGTGTCGGACGATTGAAGTCGTTAATTCCGTGATAAAATTATCAACTGTGGCGACTAATAAATTTGATTCCATCGGCGAAGAGCTCTACTCACCTCCACTCAATTTCTCAATGGTCGATAACGGTATATACCGCTCTGGATTTCCAGATACCGCCAATTTCTCGTTTCTTAAAACCCTAGGTTTACGCTCAATTGTATATTTGTGTCCGGAACCGTATCCGGAGCATAACATGGACTTTTTGAAAACTAATGGAATTCAGTTGTTTCAGTTTGGAATTGAAGGTACTAAGGAACCTTTTGTCAATATTCCTGAAGACACAATTCGTGAAGCGCTAAAAGTTGTTCTTGATGTAAGAAATCACCCCTTGTTAATTCATTGCAAAAGAGGCAAGCATCGAACTGGTTGTCTAGTGGGATGCTTGAGAAAAATTCAGAGATGGTGTCTGACGTCTATTTTTGACGAGTACCAAAGGTTTGCAGCTGCAAAGGCTCGAATTTCAGATCAAAGGTTTATGGAGCTGTTTGATGCATCTGGATATAAAGACATACCATCATGTCCATGCTCATGTTCTAGGAGATAA 624 40.22 MKFDQQELNQQERDTCRTIEVVNSVIKLSTVATNKFDSIGEELYSPPLNFSMVDNGIYRSGFPDTANFSFLKTLGLRSIVYLCPEPYPEHNMDFLKTNGIQLFQFGIEGTKEPFVNIPEDTIREALKVVLDVRNHPLLIHCKRGKHRTGCLVGCLRKIQRWCLTSIFDEYQRFAAAKARISDQRFMELFDASGYKDIPSCPCSCSRR 207
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21624 207 ProSiteProfiles Dual specificity protein phosphatase domain profile. 49 200 IPR020422 GO:0006470(InterPro)
Pslu1g21624 207 PANTHER TYROSINE-PROTEIN PHOSPHATASE 24 196 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Pslu1g21624 207 PRINTS Plant and fungal dual specificity phosphatase signature 117 131 IPR020428 GO:0016791(InterPro)
Pslu1g21624 207 PRINTS Plant and fungal dual specificity phosphatase signature 81 94 IPR020428 GO:0016791(InterPro)
Pslu1g21624 207 PRINTS Plant and fungal dual specificity phosphatase signature 44 61 IPR020428 GO:0016791(InterPro)
Pslu1g21624 207 PRINTS Plant and fungal dual specificity phosphatase signature 100 114 IPR020428 GO:0016791(InterPro)
Pslu1g21624 207 FunFam probable tyrosine-protein phosphatase At1g05000 43 193 - -
Pslu1g21624 207 ProSitePatterns Tyrosine specific protein phosphatases active site. 139 149 IPR016130 GO:0016311(InterPro)
Pslu1g21624 207 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 44 190 IPR029021 -
Pslu1g21624 207 Gene3D Protein tyrosine phosphatase superfamily 44 193 IPR029021 -
Pslu1g21624 207 CDD PFA-DSP-Siw14 46 190 - -
Pslu1g21624 207 Pfam Tyrosine phosphatase family 46 195 IPR004861 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21624 K18045 tyrosine-protein phosphatase SIW14 [EC:3.1.3.48]
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Event-related genes

Select Gene_1 Gene_2 Event_name
134968 Pslu1g21624 Pslu3g16519
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:30167407 Pslu1g21624 Pslu-Chr1:155204978 dispersed
Pslu Pslu-Chr1:155204978 Pslu3g16519 Pslu-Chr3:118426094 dispersed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Pslu1g00797 . 17 197 Protein tyrosine phosphatase (PTP) family AT3G02800 66.298 1.14e-90 263.0
Pslu1g01679 . 16 303 Protein tyrosine phosphatase (PTP) family AT2G35320 57.525 7.66e-128 365.0
Pslu1g04020 . 76 159 Protein tyrosine phosphatase (PTP) family AT3G01510 28.571 2.58e-06 47.0
Pslu1g04530 . 52 210 Protein tyrosine phosphatase (PTP) family AT1G05000 57.669 6.44e-66 201.0
Pslu1g08582 . 1 653 Protein tyrosine phosphatase (PTP) family AT5G01290 63.212 0.0 853.0
Pslu1g10856 . 34 226 Protein tyrosine phosphatase (PTP) family AT5G56610 69.697 3.18e-99 288.0
Pslu1g21624 ACH 17 215 Protein tyrosine phosphatase (PTP) family AT1G05000 71.5 7.17e-101 289.0
Pslu1g21947 ACH 30 611 Protein tyrosine phosphatase (PTP) family AT3G19420 67.979 0.0 823.0
Pslu2g02406 . 1 401 Protein tyrosine phosphatase (PTP) family AT5G39400 55.198 1.43e-161 458.0
Pslu2g02700 . 33 611 Protein tyrosine phosphatase (PTP) family AT3G19420 59.661 0.0 708.0
Pslu2g02701 . 195 281 Protein tyrosine phosphatase (PTP) family AT3G50110 35.556 1.15e-06 48.9
Pslu2g15493 ACH 58 187 Protein tyrosine phosphatase (PTP) family AT3G23610 35.878 3.52e-23 96.3
Pslu3g00945 . 459 536 Protein tyrosine phosphatase (PTP) family AT3G01510 36.709 7.51e-07 49.7
Pslu3g07729 . 6 840 Protein tyrosine phosphatase (PTP) family AT3G10550 64.07 0.0 1121.0
Pslu3g10809 . 16 784 Protein tyrosine phosphatase (PTP) family AT3G55270 50.301 0.0 736.0
Pslu3g15625 . 265 326 Protein tyrosine phosphatase (PTP) family AT3G52180 39.062 1.32e-06 48.5
Pslu3g16519 ACH 1 203 Protein tyrosine phosphatase (PTP) family AT1G05000 64.216 6.97e-92 265.0
Pslu3g16678 ACH 306 611 Protein tyrosine phosphatase (PTP) family AT3G19420 53.896 2.56e-104 315.0
Pslu3g17629 ACH 1 395 Protein tyrosine phosphatase (PTP) family AT5G58160 62.72 0.0 569.0
Pslu3g18036 . 34 227 Protein tyrosine phosphatase (PTP) family AT5G56610 69.588 4.43e-98 286.0
Pslu4g00501 . 46 282 Protein tyrosine phosphatase (PTP) family AT3G10940 77.731 4.64e-141 397.0
Pslu4g00837 . 1 473 Protein tyrosine phosphatase (PTP) family AT3G55270 67.427 0.0 660.0
Pslu4g01057 ACH 1 372 Protein tyrosine phosphatase (PTP) family AT3G52180 52.926 1.19e-127 370.0
Pslu4g01070 . 19 840 Protein tyrosine phosphatase (PTP) family AT3G10550 62.41 0.0 1050.0
Pslu4g01847 . 32 590 Protein tyrosine phosphatase (PTP) family AT3G01510 69.34 0.0 785.0
Pslu5g02102 . 1 653 Protein tyrosine phosphatase (PTP) family AT5G01290 53.139 0.0 697.0
Pslu5g13389 ACH 54 457 Protein tyrosine phosphatase (PTP) family AT3G55270 53.448 1.35e-154 455.0
Pslu5g13980 . 1 337 Protein tyrosine phosphatase (PTP) family AT2G35680 53.216 1.04e-112 328.0
Pslu5g15281 . 1 256 Protein tyrosine phosphatase (PTP) family AT2G04550 60.687 1.14e-105 305.0
Pslu5g15867 . 21 197 Protein tyrosine phosphatase (PTP) family AT3G23610 58.757 3.00e-73 219.0
Pslu5g16165 . 235 361 Protein tyrosine phosphatase (PTP) family AT3G19420 86.614 8.11e-85 259.0
Pslu5g16225 ACH 1 419 Protein tyrosine phosphatase (PTP) family AT5G58160 63.27 0.0 580.0
Pslu6g00555 ACH 1 378 Protein tyrosine phosphatase (PTP) family AT3G52180 59.318 1.60e-157 446.0
Pslu6g01608 . 10 191 Protein tyrosine phosphatase (PTP) family AT3G02800 60.44 3.44e-85 249.0
Pslu6g15216 . 14 912 Protein tyrosine phosphatase (PTP) family AT5G23720 59.868 0.0 1033.0
Pslu6g15219 . 1 912 Protein tyrosine phosphatase (PTP) family AT5G23720 60.761 0.0 1084.0
Pslu6g15220 . 696 899 Protein tyrosine phosphatase (PTP) family AT5G23720 69.118 5.28e-93 296.0
Pslu6g15851 . 451 534 Protein tyrosine phosphatase (PTP) family AT3G01510 35.714 1.50e-06 47.4
Pslu6g16272 . 82 163 Protein tyrosine phosphatase (PTP) family AT5G56610 65.854 1.60e-28 101.0
Pslu7g02292 . 13 239 Protein tyrosine phosphatase (PTP) family AT3G44620 61.111 1.18e-94 276.0
Pslu7g13100 . 53 187 Protein tyrosine phosphatase (PTP) family AT3G23610 29.834 9.88e-18 79.0
Pslu7g13107 . 6 335 Protein tyrosine phosphatase (PTP) family AT1G71860 62.985 2.40e-149 425.0