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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21636 ATGAATGCTTACAAGGCATACAAAGCATGTGTGCCAATAGCCTGGAGTCCAAACTTATACATAACTTTAGTTAGAGGAATACCAGGAACCAGGAGACTTCACAGGCGAACTCTCGAAGCCTTACGTTTAGGAAAGTGTAATCGAACTGTTATGCGATGGAATACTCCTACTGTCAGAGGAATGCTTCAGCAGGTTAAAAGATTGGTTGTGATTGAAACTGAAGAAATGTTTAAGGCACGTAAAGAAAAGGAATTAAAGCATCGTGCAATCCGTCCACCTTTGGTTGTCAGCCATCTTCCTCCTCCAGCCAGCGACTCGTCTCAACAAGCTGCCTAA 336 43.45 MNAYKAYKACVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMFKARKEKELKHRAIRPPLVVSHLPPPASDSSQQAA 111
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21636 111 Hamap Large ribosomal subunit protein uL30 [rpmD]. 16 73 IPR005996 GO:0003735(InterPro)|GO:0006412(InterPro)|GO:0015934(InterPro)
Pslu1g21636 111 Pfam Ribosomal protein L30p-L7e 20 69 IPR016082 -
Pslu1g21636 111 Gene3D - 17 78 IPR036919 -
Pslu1g21636 111 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L30 1 107 IPR005996 GO:0003735(InterPro)|GO:0005739(PANTHER)|GO:0006412(InterPro)|GO:0015934(InterPro)
Pslu1g21636 111 FunFam 50S ribosomal protein L30 17 98 - -
Pslu1g21636 111 SUPERFAMILY Ribosomal protein L30p-L7e 18 72 IPR036919 -
Pslu1g21636 111 CDD Ribosomal-L30 19 72 IPR005996 GO:0003735(InterPro)|GO:0006412(InterPro)|GO:0015934(InterPro)
Pslu1g21636 111 NCBIfam 50S ribosomal protein L30 19 72 IPR005996 GO:0003735(InterPro)|GO:0006412(InterPro)|GO:0015934(InterPro)
Pslu1g21636 111 MobiDBLite consensus disorder prediction 89 111 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21636 K02907 large subunit ribosomal protein L30
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Event-related genes

Select Gene_1 Gene_2 Event_name
134971 Pslu1g21636 Pslu5g15311
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:155338111 Pslu5g15311 Pslu-Chr5:111853954 wgd