AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21638 ATGGAAGAAGATACACCGGCAACAAACCCTCACCATGAATTGATCACCGCATTCTCAGAAATCACCTCCGCTTCAAAAGAAGAAGCCATTTTCTTCCTCGAATCGCACAATTACGATCTCGATTCCGCCGTTTCCACCTTCTTCGAAACCGCCGCCGGAGAACACGCTCCGGTACCTCACCGGAACCCTAACGCTTCTGATGATATCGAAATATCTCCTTCTTCTTCTCCGTCTCGTTCCCGATCAGCTTCTCCTCCGCCGTCGCTAGGGTTACAGCAATTGGCCGGTGGAAATCCTTACAATTTGAGATCGAGAAACAGTGGTGCGGATAAGAAGGCGTCTGGTAGTAGGTCAACACGGTCAACTGGACGGATACGGACGTTTGCCGATCTGAATCAACCTGGTGATGAATCCGGAAGTGATCCGGATGAACCTAATGAGTATTACACTGGTGGTGAAAAAAGTGGAATGCTCGTGCAGGATCCAACAAGAATGAATGATGTGGAATCGCTGTTTAACCAAGCTAGACAAGCAGGGGCGGAAGAAACAACTCTTGATCAACTTCAGCCATCTTCAAGCTCAAGAAGCTTTGCTGGAAGAGGAAGACTACTGTCTGGAGAGACACCACCTGCTGCTCCCCAACAAACTGAACCTGAGGTTAACAGACATACCATCACTTTCTGGACCAATGGCTTCACAGTAAATGATGGTCCTTTGAGGAGGCTGGATGATCCTCAAAATGCGTCTTTTTTGGAGAGCATAAGGAAGTCTGAGTGTCCCGAAGAACTCAAGCTTGCTAAAGGAAGAGCTCCTGTCCATGTTAGTCTTGTGAGGAAGCTGGAGGAATACCCTGTCCAGAAACAACGTCCTGCTGCCTTTGTGGGAGTGGGTAGAACCTTAGGCACTTCCACCTCTTCAGAGGACACCATAGTTGCTCCTTTGGCCCCTGCAAATGCAGCCCCAACTCCATCAATGGGCCTAGTTGTGGATGACACATTACCATCTACTTCTGTTCAGTTGAGATTGGCTGATGGGACCCGTATGGTTTCACACTTTAATTTCCATCACACAATAAGCAATATCCGTTCGTTCATTGATGCGTCGAGGCCTGGAGGGACCAGGGCTTATCAGCTACTAACAATGGGATTCCCTCCAAAGCAGCTTAACGATATGAATCAGACAATTGAAGAAGCTGGGCTAGCCAATTCGGTCGTAATCCAGAAACTCTAA 1230 48.13 MEEDTPATNPHHELITAFSEITSASKEEAIFFLESHNYDLDSAVSTFFETAAGEHAPVPHRNPNASDDIEISPSSSPSRSRSASPPPSLGLQQLAGGNPYNLRSRNSGADKKASGSRSTRSTGRIRTFADLNQPGDESGSDPDEPNEYYTGGEKSGMLVQDPTRMNDVESLFNQARQAGAEETTLDQLQPSSSSRSFAGRGRLLSGETPPAAPQQTEPEVNRHTITFWTNGFTVNDGPLRRLDDPQNASFLESIRKSECPEELKLAKGRAPVHVSLVRKLEEYPVQKQRPAAFVGVGRTLGTSTSSEDTIVAPLAPANAAPTPSMGLVVDDTLPSTSVQLRLADGTRMVSHFNFHHTISNIRSFIDASRPGGTRAYQLLTMGFPPKQLNDMNQTIEEAGLANSVVIQKL 409
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21638 409 MobiDBLite consensus disorder prediction 54 158 - -
Pslu1g21638 409 ProSiteProfiles SEP domain profile. 220 285 IPR012989 -
Pslu1g21638 409 Pfam UBX domain 334 408 IPR001012 GO:0005515(InterPro)
Pslu1g21638 409 ProSiteProfiles UBX domain profile. 331 408 IPR001012 GO:0005515(InterPro)
Pslu1g21638 409 SMART faf-3 217 310 IPR012989 -
Pslu1g21638 409 MobiDBLite consensus disorder prediction 67 128 - -
Pslu1g21638 409 MobiDBLite consensus disorder prediction 179 199 - -
Pslu1g21638 409 SMART ubx-3 330 409 IPR001012 GO:0005515(InterPro)
Pslu1g21638 409 FunFam Plant UBX domain-containing protein 4 285 409 - -
Pslu1g21638 409 Pfam SEP domain 225 298 IPR012989 -
Pslu1g21638 409 Pfam UBA-like domain 13 52 - -
Pslu1g21638 409 CDD UBX-UBXN2 337 408 - -
Pslu1g21638 409 Gene3D - 9 51 - -
Pslu1g21638 409 SUPERFAMILY UBA-like 9 50 IPR009060 GO:0005515(InterPro)
Pslu1g21638 409 SUPERFAMILY NSFL1 (p97 ATPase) cofactor p47, SEP domain 215 305 IPR036241 -
Pslu1g21638 409 Gene3D - 285 409 - -
Pslu1g21638 409 MobiDBLite consensus disorder prediction 179 218 - -
Pslu1g21638 409 Gene3D SEP domain 220 282 IPR036241 -
Pslu1g21638 409 SUPERFAMILY Ubiquitin-like 293 407 IPR029071 -
Pslu1g21638 409 PANTHER UBX DOMAIN CONTAINING PROTEIN 11 408 - GO:0000045(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007030(PANTHER)|GO:0031468(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0061025(PANTHER)
Pslu1g21638 409 FunFam UBX domain-containing protein 1 220 282 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21638 K14012 UBX domain-containing protein 1
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:30274783 Pslu1g21638 Pslu-Chr1:155362945 dispersed
Pslu Pslu-Chr1:155362945 Pslu2g10663 Pslu-Chr2:79130636 dispersed